Al_scaffold_0008_21 (Arabidopsis lyrata)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Al_scaffold_0008_21 T247833_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G47660
M02266_2.00 		Arabidopsis thaliana
RCGGTAAW
WTTACCGY		 PBM
Weirauch et al.(2014)
pTH7911 		0.962 0.957
AT5G47660
M06980_2.00 		Arabidopsis thaliana
RCRGTWAAAAHDDHW
WDHHDTTTTWACYGY		 Dap-seq
OMalley et al.(2016)
AT5G47660_col_a 		0.962 0.957
AT5G47660
M06981_2.00 		Arabidopsis thaliana
WHHHHRCRGTWAAWW
WWTTWACYGYDDDDW		 Dap-seq
OMalley et al.(2016)
AT5G47660_colamp_a 		0.962 0.957
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0008_21 MADF 308 379

Links

Other MADF family TFs
Other Arabidopsis lyrata TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK10791.1 Cannabis sativa PK10791.1 I 0.000
Ca_13671 Cicer arietinum Ca_13671 N 0.000
Ca_14825 Cicer arietinum Ca_14825 N 0.000
GLYMA07G21160 Glycine max GLYMA07G21160 I 0.000
GLYMA11G13210 Glycine max GLYMA11G13210 N 0.000
GLYMA12G05250 Glycine max GLYMA12G05250 N 0.000
GLYMA20G01130 Glycine max GLYMA20G01130 N 0.000
chr2.CM0262.200.nc Lotus japonicus chr2.CM0262.200.nc I 0.000
chr2.CM0308.470.nd Lotus japonicus chr2.CM0308.470.nd I 0.000
MTR_1g034240 Medicago truncatula MTR_1g034240 N 0.000
MTR_4g068320 Medicago truncatula MTR_4g068320 N 0.000
PRUPE_ppa006275mg Prunus persica PRUPE_ppa006275mg I 0.000
29851.m002498 Ricinus communis 29851.m002498 I 0.000