PK04914.1 (Cannabis sativa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 PK04914.1 T251167_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK04914.1
M01262_2.00		 Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.951 0.811
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.951 0.811
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.951 0.811
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01262_2.00 MADF 2 83

DNA Binding Domains

Protein ID Domain From To Sequence
PK04914.1 MADF 203 284

Links

Other MADF family TFs
Other Cannabis sativa TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.863
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.893
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.938
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.951
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.951
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.951
Bo5g137800 Brassica oleracea Bo5g137800 I 0.942
Bra029812 Brassica rapa Bra029812 I 0.942
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.944
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.944
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.893
Ca_20148 Cicer arietinum Ca_20148 I 0.946
Cla018015 Citrullus lanatus Cla018015 I 0.954
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.958
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.954
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.949
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.944
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.919
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.945
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.945
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.890
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.943
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.814
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.822
MDP0000415733 Malus domestica MDP0000415733 I 0.884
MDP0000201016 Malus domestica MDP0000201016 I 0.884
MDP0000399495 Malus domestica MDP0000399495 I 0.884
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.953
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.946
mgf008067m Mimulus guttatus mgf008067m I 0.896
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.907
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.879
OB04G18670 Oryza brachyantha OB04G18670 I 0.825
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.825
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.825
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.825
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.825
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.917
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.844
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.838
Pm026265 Prunus mume Pm026265 I 0.947
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.947
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.892
29815.m000504 Ricinus communis 29815.m000504 I 0.955
28077.m000081 Ricinus communis 28077.m000081 I 0.859
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.917
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.838
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.838
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.856
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.856
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.946
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.946
TCM_022397 Theobroma cacao TCM_022397 I 0.933
TCM_043551 Theobroma cacao TCM_043551 I 0.879
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.946
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.909