Z518_09438 (Rhinocladiella mackenziei)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Z518_09438 T256848_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.729 0.729
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.729 0.729
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.729 0.729
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KIX01712 MADS box 10 57

Links

Other MADS box family TFs
Other Rhinocladiella mackenziei TFs

240 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.1__4181__AT1G51120.1 Arabidopsis lyrata fgenesh2_kg.1__4181__AT1G51120.1 I
fgenesh2_kg.1__4154__AT1G50680.1 Arabidopsis lyrata fgenesh2_kg.1__4154__AT1G50680.1 I
AT1G50680 Arabidopsis thaliana AT1G50680 I
Bostr.26675s0109 Boechera stricta Bostr.26675s0109 I
Bostr.26675s0076 Boechera stricta Bostr.26675s0076 I
Bo5g081270 Brassica oleracea Bo5g081270 I
Bo6g024770 Brassica oleracea Bo6g024770 I
Bo6g022450 Brassica oleracea Bo6g022450 I
Bo6g022280 Brassica oleracea Bo6g022280 I
Bra018869 Brassica rapa Bra018869 I
Bra030458 Brassica rapa Bra030458 I
Bra018854 Brassica rapa Bra018854 I
Cagra.2093s0004 Capsella grandiflora Cagra.2093s0004 I
Carubv10011257m.g Capsella rubella Carubv10011257m.g I
Carubv10011592m.g Capsella rubella Carubv10011592m.g I
Cla004867 Citrullus lanatus Cla004867 I
Cucsa.142990 Cucumis sativus Cucsa.142990 I
Thhalv10012161m.g Eutrema salsugineum Thhalv10012161m.g I
Thhalv10012356m.g Eutrema salsugineum Thhalv10012356m.g I
Thhalv10012152m.g Eutrema salsugineum Thhalv10012152m.g I
TCM_040397 Theobroma cacao TCM_040397 I
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I