cassava15247.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava15247.m1 T257177_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.756 0.756
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava15247.m1 MADS box 10 54

Links

Other MADS box family TFs
Other Manihot esculenta TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32078 Aegilops tauschii F775_32078 N 0.000
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.000
BRADI4G21540 Brachypodium distachyon BRADI4G21540 N 0.000
PK04144.1 Cannabis sativa PK04144.1 N 0.000
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N 0.000
Cucsa.132180 Cucumis sativus Cucsa.132180 N 0.000
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.000
LPERR12G16300 Leersia perrieri LPERR12G16300 N 0.000
MDP0000152128 Malus domestica MDP0000152128 N 0.000
MDP0000574053 Malus domestica MDP0000574053 N 0.000
GSMUA_Achr2G12870_001 Musa acuminata GSMUA_Achr2G12870_001 N 0.000
GSMUA_Achr7G01310_001 Musa acuminata GSMUA_Achr7G01310_001 N 0.000
OBART12G19140 Oryza barthii OBART12G19140 N 0.000
OB12G26010 Oryza brachyantha OB12G26010 N 0.000
ORGLA12G0164400 Oryza glaberrima ORGLA12G0164400 N 0.000
OGLUM12G20810 Oryza glumaepatula OGLUM12G20810 N 0.000
BGIOSGA035814 Oryza indica BGIOSGA035814 N 0.000
OMERI12G13490 Oryza meridionalis OMERI12G13490 N 0.000
ONIVA02G25900 Oryza nivara ONIVA02G25900 N 0.000
OPUNC12G17310 Oryza punctata OPUNC12G17310 N 0.000
ORUFI12G21360 Oryza rufipogon ORUFI12G21360 N 0.000
OS12G0620400 Oryza sativa OS12G0620400 N 0.000
Pavir.J29994 Panicum virgatum Pavir.J29994 N 0.000
Pavir.Ib04134 Panicum virgatum Pavir.Ib04134 N 0.000
Pavir.Ia01134 Panicum virgatum Pavir.Ia01134 N 0.000
Pavir.Ca02859 Panicum virgatum Pavir.Ca02859 N 0.000
Pm027560 Prunus mume Pm027560 N 0.000
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.000
Si035862m.g Setaria italica Si035862m.g N 0.000
Sb08g022000 Sorghum bicolor Sb08g022000 N 0.000
Sb01g013320 Sorghum bicolor Sb01g013320 N 0.000
Traes_5DS_438FF99FC Triticum aestivum Traes_5DS_438FF99FC N 0.000
Traes_5BS_19E54A2E0 Triticum aestivum Traes_5BS_19E54A2E0 N 0.000
Traes_5AS_BABE20FBA Triticum aestivum Traes_5AS_BABE20FBA N 0.000
TRIUR3_27778 Triticum urartu TRIUR3_27778 N 0.000
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.000
GRMZM2G157470 Zea mays GRMZM2G157470 N 0.000
GRMZM2G022365 Zea mays GRMZM2G022365 N 0.000