Carubv10015354m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10015354m.g T257776_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015354m MADS box 16 62

Links

Other MADS box family TFs
Other Capsella rubella TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 0.702
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I 0.723
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 0.702
AGL77 Arabidopsis thaliana AT5G38740 I 0.702
AGL81 Arabidopsis thaliana AT5G39750 I 0.702
AGL76 Arabidopsis thaliana AT5G40120 I 0.702
AGL78 Arabidopsis thaliana AT5G65330 D 0.702
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.702
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I 0.702
Carubv10006654m.g Capsella rubella Carubv10006654m.g I 0.809
Carubv10007456m.g Capsella rubella Carubv10007456m.g I 0.915
Carubv10007591m.g Capsella rubella Carubv10007591m.g I 0.809