Ciclev10026457m.g (Citrus clementina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ciclev10026457m.g T257904_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.938 0.938
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.938 0.938
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.938 0.938
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.792 0.792
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.750 0.750
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.750 0.750
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.729 0.729
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.729 0.729
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.729 0.729
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.729 0.729
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.729 0.729
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.729 0.729
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.729 0.729
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.729 0.729
Q9ATE2_PETHY
M11007_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP29_01 		0.729 0.729
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.729 0.729
Q9ZRA5_MALDO
M11030_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_04 		0.729 0.729
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.729 0.729
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.708 0.708
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.708 0.708
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.708 0.708
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.708 0.708
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.708 0.708
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.708 0.708
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.708 0.708
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10026455m MADS box 10 57
Ciclev10026457m MADS box 10 57

Links

Other MADS box family TFs
Other Citrus clementina TFs

761 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04223 Aegilops tauschii F775_04223 I 0.000
F775_43210 Aegilops tauschii F775_43210 I 0.000
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.000
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.000
BRADI3G18670 Brachypodium distachyon BRADI3G18670 N 0.000
LPERR06G13350 Leersia perrieri LPERR06G13350 N 0.000
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.000
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.000
OBART01G45740 Oryza barthii OBART01G45740 N 0.000
OBART06G13310 Oryza barthii OBART06G13310 N 0.000
OBART09G00850 Oryza barthii OBART09G00850 N 0.000
ORGLA01G0394900 Oryza glaberrima ORGLA01G0394900 N 0.000
ORGLA06G0273400 Oryza glaberrima ORGLA06G0273400 N 0.000
ORGLA09G0007400 Oryza glaberrima ORGLA09G0007400 N 0.000
OGLUM01G50090 Oryza glumaepatula OGLUM01G50090 N 0.000
OGLUM09G01140 Oryza glumaepatula OGLUM09G01140 N 0.000
OGLUM06G14250 Oryza glumaepatula OGLUM06G14250 N 0.000
BGIOSGA030217 Oryza indica BGIOSGA030217 N 0.000
BGIOSGA022830 Oryza indica BGIOSGA022830 N 0.000
BGIOSGA005284 Oryza indica BGIOSGA005284 N 0.000
OLONG_015132 Oryza longistaminata OLONG_015132 N 0.000
OLONG_018222 Oryza longistaminata OLONG_018222 N 0.000
OLONG_027660 Oryza longistaminata OLONG_027660 N 0.000
OMERI09G00900 Oryza meridionalis OMERI09G00900 N 0.000
ONIVA01G52000 Oryza nivara ONIVA01G52000 N 0.000
ONIVA06G15960 Oryza nivara ONIVA06G15960 N 0.000
ONIVA09G00960 Oryza nivara ONIVA09G00960 N 0.000
OPUNC06G12720 Oryza punctata OPUNC06G12720 N 0.000
OPUNC01G44670 Oryza punctata OPUNC01G44670 N 0.000
OPUNC09G00580 Oryza punctata OPUNC09G00580 N 0.000
ORUFI01G49230 Oryza rufipogon ORUFI01G49230 N 0.000
ORUFI06G14240 Oryza rufipogon ORUFI06G14240 N 0.000
ORUFI09G00870 Oryza rufipogon ORUFI09G00870 N 0.000
OS01G0975800 Oryza sativa OS01G0975800 N 0.000
OS09G0116800 Oryza sativa OS09G0116800 N 0.000
Pavir.J11717 Panicum virgatum Pavir.J11717 I 0.000
Pavir.J00788 Panicum virgatum Pavir.J00788 I 0.000
Pavir.Bb00804 Panicum virgatum Pavir.Bb00804 N 0.000
Pavir.Ba03370 Panicum virgatum Pavir.Ba03370 N 0.000
28830.m000229 Ricinus communis 28830.m000229 N 0.000
Si019951m.g Setaria italica Si019951m.g I 0.000
Sb09g029120 Sorghum bicolor Sb09g029120 I 0.000
Sb0836s002010 Sorghum bicolor Sb0836s002010 N 0.000
Sb07g007373 Sorghum bicolor Sb07g007373 N 0.000
Sb07g007306 Sorghum bicolor Sb07g007306 N 0.000
Sb06g015640 Sorghum bicolor Sb06g015640 N 0.000
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.000
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.000
GRMZM5G891280 Zea mays GRMZM5G891280 I 0.000
AC234185.1_FG006 Zea mays AC234185.1_FG006 I 0.000