Pavir.J11717 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.J11717 T258947_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.708 0.708
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.708 0.708
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J11717.1.p MADS box 18 65

Links

Other MADS box family TFs
Other Panicum virgatum TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC234185.1_FG006 Zea mays AC234185.1_FG006 I 1.000
GRMZM5G891280 Zea mays GRMZM5G891280 I 1.000
Sb09g029120 Sorghum bicolor Sb09g029120 I 1.000
Si019951m.g Setaria italica Si019951m.g I 1.000
Pavir.J00788 Panicum virgatum Pavir.J00788 I 1.000
Pavir.Fb00782 Panicum virgatum Pavir.Fb00782 I 0.931
BGIOSGA005284 Oryza indica BGIOSGA005284 N 0.917
BGIOSGA030217 Oryza indica BGIOSGA030217 N 0.917
OBART01G45740 Oryza barthii OBART01G45740 N 0.917
OBART09G00850 Oryza barthii OBART09G00850 N 0.917
OGLUM01G50090 Oryza glumaepatula OGLUM01G50090 N 0.917
OGLUM09G01140 Oryza glumaepatula OGLUM09G01140 N 0.917
OLONG_018222 Oryza longistaminata OLONG_018222 N 0.917
OLONG_027660 Oryza longistaminata OLONG_027660 N 0.917
OMERI09G00900 Oryza meridionalis OMERI09G00900 N 0.917
ONIVA01G52000 Oryza nivara ONIVA01G52000 N 0.917
ONIVA09G00960 Oryza nivara ONIVA09G00960 N 0.917
OPUNC01G44670 Oryza punctata OPUNC01G44670 N 0.917
ORGLA01G0394900 Oryza glaberrima ORGLA01G0394900 N 0.917
ORGLA09G0007400 Oryza glaberrima ORGLA09G0007400 N 0.917
ORUFI01G49230 Oryza rufipogon ORUFI01G49230 N 0.917
ORUFI09G00870 Oryza rufipogon ORUFI09G00870 N 0.917
OS01G0975800 Oryza sativa OS01G0975800 N 0.917
OS09G0116800 Oryza sativa OS09G0116800 N 0.917
F775_04223 Aegilops tauschii F775_04223 I 0.896
F775_43210 Aegilops tauschii F775_43210 I 0.896
LPERR01G40130 Leersia perrieri LPERR01G40130 N 0.896
OPUNC09G00580 Oryza punctata OPUNC09G00580 N 0.896
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.896
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.896
LPERR02G10390 Leersia perrieri LPERR02G10390 N 0.875
OB01G55160 Oryza brachyantha OB01G55160 N 0.875
BRADI4G39420 Brachypodium distachyon BRADI4G39420 N 0.854
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.833
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.833
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.833
Pavir.Ba03370 Panicum virgatum Pavir.Ba03370 N 0.833
Pavir.Bb00804 Panicum virgatum Pavir.Bb00804 N 0.833
Si032189m.g Setaria italica Si032189m.g N 0.792
OPUNC09G08220 Oryza punctata OPUNC09G08220 N 0.771
Si038960m.g Setaria italica Si038960m.g N 0.771
Pavir.Bb00803 Panicum virgatum Pavir.Bb00803 N 0.771
AMTR_s00025p00244880 Amborella trichopoda AMTR_s00025p00244880 N 0.750
BRADI2G26320 Brachypodium distachyon BRADI2G26320 N 0.750
GRMZM2G459864 Zea mays GRMZM2G459864 N 0.750
GRMZM2G472100 Zea mays GRMZM2G472100 N 0.750
OB06G21580 Oryza brachyantha OB06G21580 N 0.750
Sb02g006700 Sorghum bicolor Sb02g006700 N 0.750
Sb07g007306 Sorghum bicolor Sb07g007306 N 0.750
Sb07g007373 Sorghum bicolor Sb07g007373 N 0.750
SELMODRAFT_450772 Selaginella moellendorffii SELMODRAFT_450772 N 0.750
SELMODRAFT_450775 Selaginella moellendorffii SELMODRAFT_450775 N 0.750
SELMODRAFT_450776 Selaginella moellendorffii SELMODRAFT_450776 N 0.750
SELMODRAFT_450777 Selaginella moellendorffii SELMODRAFT_450777 N 0.750
gw1.81.151.1 Physcomitrella patens gw1.81.151.1 N 0.750
gw1.88.220.1 Physcomitrella patens gw1.88.220.1 N 0.750
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.750
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.750
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.750
F775_21960 Aegilops tauschii F775_21960 N 0.733
BGIOSGA007600 Oryza indica BGIOSGA007600 N 0.729
BRADI1G20090 Brachypodium distachyon BRADI1G20090 N 0.729
BRADI3G18670 Brachypodium distachyon BRADI3G18670 N 0.729
F775_23176 Aegilops tauschii F775_23176 N 0.729
OGLUM02G04740 Oryza glumaepatula OGLUM02G04740 N 0.729
ONIVA02G05120 Oryza nivara ONIVA02G05120 N 0.729
ORGLA02G0045500 Oryza glaberrima ORGLA02G0045500 N 0.729
ORUFI02G05030 Oryza rufipogon ORUFI02G05030 N 0.729
Sb02g006710 Sorghum bicolor Sb02g006710 N 0.729
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
OBART02G04930 Oryza barthii OBART02G04930 N 0.724
OS09G0402533 Oryza sativa OS09G0402533 N 0.718
MLOC_78558 Hordeum vulgare MLOC_78558 N 0.711
A1YJE4_HORVD Hordeum vulgare A1YJE4_HORVD D 0.708
BGIOSGA021662 Oryza indica BGIOSGA021662 I 0.708
BGIOSGA022830 Oryza indica BGIOSGA022830 N 0.708
Bra026764 Brassica rapa Bra026764 N 0.708
BRADI1G27900 Brachypodium distachyon BRADI1G27900 N 0.708
BRADI1G45807 Brachypodium distachyon BRADI1G45807 I 0.708
BRADI3G58220 Brachypodium distachyon BRADI3G58220 I 0.708
GRMZM2G046885 Zea mays GRMZM2G046885 I 0.708
GRMZM2G370777 Zea mays GRMZM2G370777 I 0.708
LPERR02G27330 Leersia perrieri LPERR02G27330 I 0.708
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.708
MAD55_ORYSJ Oryza sativa MAD55_ORYSJ D 0.708
OB06G16920 Oryza brachyantha OB06G16920 I 0.708
OGLUM06G14250 Oryza glumaepatula OGLUM06G14250 N 0.708
OLONG_015132 Oryza longistaminata OLONG_015132 N 0.708
OMERI02G05750 Oryza meridionalis OMERI02G05750 N 0.708
OMERI06G08590 Oryza meridionalis OMERI06G08590 I 0.708
ONIVA06G15960 Oryza nivara ONIVA06G15960 N 0.708
OPUNC02G04080 Oryza punctata OPUNC02G04080 N 0.708
OPUNC06G07080 Oryza punctata OPUNC06G07080 I 0.708
OPUNC06G12720 Oryza punctata OPUNC06G12720 N 0.708
ORGLA02G0288600 Oryza glaberrima ORGLA02G0288600 I 0.708
ORGLA06G0069900 Oryza glaberrima ORGLA06G0069900 I 0.708
ORGLA06G0273400 Oryza glaberrima ORGLA06G0273400 N 0.708
ORUFI06G14240 Oryza rufipogon ORUFI06G14240 N 0.708
OS06G0217300 Oryza sativa OS06G0217300 I 0.708
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.708
Q4U0F1_WHEAT Triticum aestivum Q4U0F1_WHEAT D 0.708
Sb02g006750 Sorghum bicolor Sb02g006750 N 0.708
Sb04g033930 Sorghum bicolor Sb04g033930 I 0.708
Sb06g015640 Sorghum bicolor Sb06g015640 N 0.708
Sb0836s002010 Sorghum bicolor Sb0836s002010 N 0.708
Si017524m.g Setaria italica Si017524m.g I 0.708
Traes_6AL_A93C6F2FC Triticum aestivum Traes_6AL_A93C6F2FC I 0.708
Traes_6DL_D8C9E421C Triticum aestivum Traes_6DL_D8C9E421C I 0.708
TRIUR3_03219 Triticum urartu TRIUR3_03219 I 0.708
TRIUR3_30073 Triticum urartu TRIUR3_30073 I 0.708
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.708
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.708
Pavir.J13837 Panicum virgatum Pavir.J13837 I 0.708
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.707
Traes_7BS_4D5DE99CC Triticum aestivum Traes_7BS_4D5DE99CC I 0.700