Pavir.Bb00803 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Bb00803 T258862_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb00803.1.p MADS box 17 64

Links

Other MADS box family TFs
Other Panicum virgatum TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G472100 Zea mays GRMZM2G472100 N 0.854
Si032189m.g Setaria italica Si032189m.g N 0.854
Pavir.Ba03370 Panicum virgatum Pavir.Ba03370 N 0.854
Pavir.Bb00804 Panicum virgatum Pavir.Bb00804 N 0.854
Sb02g006700 Sorghum bicolor Sb02g006700 N 0.833
Sb02g006710 Sorghum bicolor Sb02g006710 N 0.833
Sb02g006750 Sorghum bicolor Sb02g006750 N 0.792
AC234185.1_FG006 Zea mays AC234185.1_FG006 I 0.771
GRMZM5G891280 Zea mays GRMZM5G891280 I 0.771
Sb09g029120 Sorghum bicolor Sb09g029120 I 0.771
Si019951m.g Setaria italica Si019951m.g I 0.771
Pavir.J00788 Panicum virgatum Pavir.J00788 I 0.771
Pavir.J11717 Panicum virgatum Pavir.J11717 I 0.771
F775_04223 Aegilops tauschii F775_04223 I 0.750
Si038960m.g Setaria italica Si038960m.g N 0.750
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.750
BGIOSGA005284 Oryza indica BGIOSGA005284 N 0.729
BGIOSGA030217 Oryza indica BGIOSGA030217 N 0.729
F775_43210 Aegilops tauschii F775_43210 I 0.729
GRMZM2G472096 Zea mays GRMZM2G472096 N 0.729
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.729
OBART01G45740 Oryza barthii OBART01G45740 N 0.729
OBART09G00850 Oryza barthii OBART09G00850 N 0.729
OGLUM01G50090 Oryza glumaepatula OGLUM01G50090 N 0.729
OGLUM09G01140 Oryza glumaepatula OGLUM09G01140 N 0.729
OLONG_018222 Oryza longistaminata OLONG_018222 N 0.729
OLONG_027660 Oryza longistaminata OLONG_027660 N 0.729
OMERI09G00900 Oryza meridionalis OMERI09G00900 N 0.729
ONIVA01G52000 Oryza nivara ONIVA01G52000 N 0.729
ONIVA09G00960 Oryza nivara ONIVA09G00960 N 0.729
OPUNC01G44670 Oryza punctata OPUNC01G44670 N 0.729
OPUNC09G00580 Oryza punctata OPUNC09G00580 N 0.729
ORGLA01G0394900 Oryza glaberrima ORGLA01G0394900 N 0.729
ORGLA09G0007400 Oryza glaberrima ORGLA09G0007400 N 0.729
ORUFI01G49230 Oryza rufipogon ORUFI01G49230 N 0.729
ORUFI09G00870 Oryza rufipogon ORUFI09G00870 N 0.729
OS01G0975800 Oryza sativa OS01G0975800 N 0.729
OS09G0116800 Oryza sativa OS09G0116800 N 0.729
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
Pavir.Fb00782 Panicum virgatum Pavir.Fb00782 I 0.724
TRIUR3_21732 Triticum urartu TRIUR3_21732 I 0.721
LPERR01G40130 Leersia perrieri LPERR01G40130 N 0.708
OPUNC06G14730 Oryza punctata OPUNC06G14730 N 0.708
Sb02g006730 Sorghum bicolor Sb02g006730 N 0.708
Sb0836s002010 Sorghum bicolor Sb0836s002010 N 0.708
Bostr.15774s0334 Boechera stricta Bostr.15774s0334 I 0.708
Thhalv10015303m.g Eutrema salsugineum Thhalv10015303m.g I 0.708