LjSGA_104570.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_104570.1 T259401_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.828 0.828
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_104570.1 MADS box 21 53

Links

Other MADS box family TFs
Other Lotus japonicus TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_9.189 Carica papaya evm.TU.supercontig_9.189 N
Ca_00942 Cicer arietinum Ca_00942 N
Lus10009816.g Linum usitatissimum Lus10009816.g N
mgf010586m Mimulus guttatus mgf010586m N
Pavir.Ea03823 Panicum virgatum Pavir.Ea03823 N
Pavir.Eb03820 Panicum virgatum Pavir.Eb03820 N
Si000079m.g Setaria italica Si000079m.g N
Sb03g045030 Sorghum bicolor Sb03g045030 N
GRMZM2G106613 Zea mays GRMZM2G106613 N