HPLM_0000743501 (Haemonchus placei)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 HPLM_0000743501 T259589_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.962 0.962
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.962 0.962
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.962 0.962
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.923 0.923
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.923 0.923
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.923 0.923
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.923 0.923
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.923 0.923
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.923 0.923
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.923 0.923
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.923 0.923
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.923 0.923
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.923 0.923
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.923 0.923
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.923 0.923
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.923 0.923
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.923 0.923
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.923 0.923
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.923 0.923
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.923 0.923
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.923 0.923
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.923 0.923
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.923 0.923
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.923 0.923
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.923 0.923
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.923 0.923
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.769 0.769
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.769 0.769
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.769 0.769
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.769 0.769
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.769 0.769
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.769 0.769
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HPLM_0000743501-mRNA-1 MADS box 1 26

Links

Other MADS box family TFs
Other Haemonchus placei TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL008720 Aedes aegypti AAEL008720 I 0.962
AAEL010926 Aedes aegypti AAEL010926 I 0.962
ANCDUO_04431 Ancylostoma duodenale ANCDUO_04431 I 1.000
AALB009948 Anopheles albimanus AALB009948 I 0.714
AARA006325 Anopheles arabiensis AARA006325 I 0.893
AATE011966 Anopheles atroparvus AATE011966 I 0.862
ACHR000964 Anopheles christyi ACHR000964 I 0.926
ACOM041693 Anopheles coluzzii ACOM041693 I 0.893
ADAC008363 Anopheles darlingi ADAC008363 I 0.926
ADIR000346 Anopheles dirus ADIR000346 I 0.926
AEPI007010 Anopheles epiroticus AEPI007010 I 0.962
AFAF013563 Anopheles farauti AFAF013563 I 0.893
AFUN006147 Anopheles funestus AFUN006147 I 0.926
AGAP010512 Anopheles gambiae AGAP010512 I 0.758
AMIN001258 Anopheles minimus AMIN001258 I 0.893
AQUA001308 Anopheles quadriannulatus AQUA001308 I 0.893
ASIS007770 Anopheles sinensis ASIS007770 I 0.926
ASTEI07120 Anopheles stephensi ASTEI07120 I 0.926
Afo_R000461 Aptenodytes forsteri Afo_R000461 I 0.889
BGIBMGA001384 Bombyx mori BGIBMGA001384 I 0.862
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I 0.724
Brh_R011000 Buceros rhinoceros Brh_R011000 I 0.923
BXY_0217000 Bursaphelenchus xylophilus BXY_0217000 I 0.793
Aan_R005414 Calypte anna Aan_R005414 I 0.889
SRF Cavia porcellus ENSCPOG00000022327 I 0.889
Cmyd_10009988 Chelonia mydas Cmyd_10009988 I 0.828
CLEC013390 Cimex lectularius CLEC013390 I 0.893
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I 0.724
CpipJ_CPIJ008335 Culex pipiens CpipJ_CPIJ008335 I 0.758
CPIJ008335 Culex quinquefasciatus CPIJ008335 I 0.758
SRF Erinaceus europaeus ENSEEUG00000005614 I 0.846
ENSFALG00000000878 Ficedula albicollis ENSFALG00000000878 I 0.889
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I 0.923
Gfo_R009695 Geospiza fortis Gfo_R009695 I 0.889
SRF Gorilla gorilla ENSGGOG00000006293 I 0.923
HHAL001485-PA Halyomorpha halys HHAL001485-PA I 0.862
HMEL017830 Heliconius melpomene HMEL017830 I 0.962
Hba_21368 Heterorhabditis bacteriophora Hba_21368 I 0.929
SRF Loxodonta africana ENSLAFG00000010278 I 0.889
LCUP011663 Lucilia cuprina LCUP011663 I 0.862
LLOJ005985 Lutzomyia longipalpis LLOJ005985 I 0.833
ENSP00000265354 Macaca fascicularis ENSP00000265354 I 0.800
MESCA001358 Megaselia scalaris MESCA001358 I 0.926
MCINX015635 Melitaea cinxia MCINX015635 I 0.893
Myotis_brandtii_SRF_10026135 Myotis brandtii Myotis_brandtii_SRF_10026135 I 0.774
ENSMLUG00000008828 Myotis lucifugus ENSMLUG00000008828 I 0.889
NCER_102270 Nosema ceranae NCER_102270 I 0.808
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I 0.923
Ogr17973 Ophisaurus gracilis Ogr17973 I 0.774
ENSOARG00000005757 Ovis aries ENSOARG00000005757 I 0.857
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I 0.724
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 0.857
RO3G_07165 Rhizopus oryzae RO3G_07165 I 0.759
O9G_005180 Rozella allomycis O9G_005180 I 0.857
SINV23954 Solenopsis invicta SINV23954 I 0.926
SRF Sorex araneus ENSSARG00000003401 I 0.846
SNOG_07763 Stagonospora nodorum SNOG_07763 I 0.724
SRF Taeniopygia guttata ENSTGUG00000004738 I 0.889
TELCIR_12851 Teladorsagia circumcincta TELCIR_12851 I 0.963
TELCIR_03792 Teladorsagia circumcincta TELCIR_03792 I 0.929
SRF Vicugna pacos ENSVPAG00000008912 I 0.923
J056_002827 Wallemia ichthyophaga J056_002827 I 0.769
WALSEDRAFT_9958 Wallemia sebi WALSEDRAFT_9958 I 0.769