MCOS_0000609801 (Mesocestoides corti)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MCOS_0000609801 T259603_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MCOS_0000609801-mRNA-1 MADS box 69 116

Links

Other MADS box family TFs
Other Mesocestoides corti TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_43556 Aegilops tauschii F775_43556 I 0.000
AMTR_s00025p00250380 Amborella trichopoda AMTR_s00025p00250380 N 0.000
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.000
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.000
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.000
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.000
GATA17 Arabidopsis thaliana AT3G16870 I 0.000
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.000
GATA16 Arabidopsis thaliana AT5G49300 D 0.000
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.000
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.000
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.000
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.000
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.000
Bo00847s050 Brassica oleracea Bo00847s050 I 0.000
Bo1g055120 Brassica oleracea Bo1g055120 I 0.000
Bo1g122970 Brassica oleracea Bo1g122970 I 0.000
Bo3g068560 Brassica oleracea Bo3g068560 I 0.000
Bo5g123610 Brassica oleracea Bo5g123610 I 0.000
Bo7g104200 Brassica oleracea Bo7g104200 I 0.000
Bra012742 Brassica rapa Bra012742 I 0.000
Bra021209 Brassica rapa Bra021209 I 0.000
Bra022184 Brassica rapa Bra022184 I 0.000
Bra033533 Brassica rapa Bra033533 I 0.000
PK18820.1 Cannabis sativa PK18820.1 I 0.000
PK21934.1 Cannabis sativa PK21934.1 I 0.000
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.000
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.000
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.000
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.000
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.000
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.000
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.000
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.000
Ca_02992 Cicer arietinum Ca_02992 I 0.000
Cla009422 Citrullus lanatus Cla009422 I 0.000
Cla022104 Citrullus lanatus Cla022104 I 0.000
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.000
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.000
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.000
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.000
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.000
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.000
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.000
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.000
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.000
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.000
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.000
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.000
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.000
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.000
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.000
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.000
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.000
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.000
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.000
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.000
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.000
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.000
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.000
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.000
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.000
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.000
MDP0000309902 Malus domestica MDP0000309902 I 0.000
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.000
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.000
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.000
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.000
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.000
mgf003937m Mimulus guttatus mgf003937m I 0.000
mgf022078m Mimulus guttatus mgf022078m I 0.000
GSMUA_Achr1G14780_001 Musa acuminata GSMUA_Achr1G14780_001 N 0.000
GSMUA_Achr7G03800_001 Musa acuminata GSMUA_Achr7G03800_001 N 0.000
GSMUA_Achr8G33850_001 Musa acuminata GSMUA_Achr8G33850_001 N 0.000
OBART01G45830 Oryza barthii OBART01G45830 I 0.000
OBART03G39750 Oryza barthii OBART03G39750 I 0.000
OB01G55040 Oryza brachyantha OB01G55040 I 0.000
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.000
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.000
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.000
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.000
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.000
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.000
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.000
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.000
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.000
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.000
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.000
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.000
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.000
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.000
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.000
OS01G0976800 Oryza sativa OS01G0976800 I 0.000
OS03G0831200 Oryza sativa OS03G0831200 I 0.000
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.000
Pavir.J03766 Panicum virgatum Pavir.J03766 I 0.000
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.000
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.000
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.000
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.000
Pm003128 Prunus mume Pm003128 I 0.000
Pm008287 Prunus mume Pm008287 I 0.000
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.000
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.000
29889.m003248 Ricinus communis 29889.m003248 I 0.000
30128.m008883 Ricinus communis 30128.m008883 N 0.000
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.000
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.000
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.000
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.000
Si002983m.g Setaria italica Si002983m.g I 0.000
Si037892m.g Setaria italica Si037892m.g I 0.000
Solyc01g060490.2 Solanum lycopersicum Solyc01g060490.2 N 0.000
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.000
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.000
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.000
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.000
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.000
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.000
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.000
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.000
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.000
TCM_004753 Theobroma cacao TCM_004753 I 0.000
TCM_021303 Theobroma cacao TCM_021303 I 0.000
TCM_026732 Theobroma cacao TCM_026732 I 0.000
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.000
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.000
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.000
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.000
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.000
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.000
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.000