Pavir.Ba01676 (Panicum virgatum)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Pavir.Ba01676 T261588_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba01676.1.p MBD 139 220
Pavir.Ba01676.2.p MBD 139 212

Links

Other MBD family TFs
Other Panicum virgatum TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00016p00083040 Amborella trichopoda AMTR_s00016p00083040 I
Aquca_043_00044 Aquilegia coerulea Aquca_043_00044 I
LFY Arabidopsis lyrata Al_scaffold_0008_2690 I
LFY Arabidopsis thaliana AT5G61850 D
Bostr.26833s0050 Boechera stricta Bostr.26833s0050 I
BRADI5G20340 Brachypodium distachyon BRADI5G20340 I
Bo2g161690 Brassica oleracea Bo2g161690 I
Bo3g109270 Brassica oleracea Bo3g109270 I
Bra019619 Brassica rapa Bra019619 I
Bra029305 Brassica rapa Bra029305 I
Cagra.4553s0022 Capsella grandiflora Cagra.4553s0022 I
Carubv10028602m.g Capsella rubella Carubv10028602m.g I
evm.TU.supercontig_13.181 Carica papaya evm.TU.supercontig_13.181 I
Ca_01386 Cicer arietinum Ca_01386 I
Ciclev10033942m.g Citrus clementina Ciclev10033942m.g I
orange1.1g044766m.g Citrus sinensis orange1.1g044766m.g I
Cucsa.156880 Cucumis sativus Cucsa.156880 I
Eucgr.K02192 Eucalyptus grandis Eucgr.K02192 I
Thhalv10005606m.g Eutrema salsugineum Thhalv10005606m.g I
gene33406-v1.0-hybrid Fragaria vesca gene33406-v1.0-hybrid I
gene30750-v1.0-hybrid Fragaria vesca gene30750-v1.0-hybrid I
gene30747-v1.0-hybrid Fragaria vesca gene30747-v1.0-hybrid I
gene30683-v1.0-hybrid Fragaria vesca gene30683-v1.0-hybrid I
GLYMA06G17170 Glycine max GLYMA06G17170 I
GLYMA04G37900 Glycine max GLYMA04G37900 I
Gorai.001G053900 Gossypium raimondii Gorai.001G053900 I
LPERR04G19570 Leersia perrieri LPERR04G19570 I
Lus10016732.g Linum usitatissimum Lus10016732.g I
Lus10022427.g Linum usitatissimum Lus10022427.g I
chr1.CM0094.750.nd Lotus japonicus chr1.CM0094.750.nd I
cassava19992.m1 Manihot esculenta cassava19992.m1 I
cassava40548.m1 Manihot esculenta cassava40548.m1 I
MTR_3g098560 Medicago truncatula MTR_3g098560 I
mgf020579m Mimulus guttatus mgf020579m I
mgf013601m Mimulus guttatus mgf013601m I
GSMUA_Achr6G16390_001 Musa acuminata GSMUA_Achr6G16390_001 I
OBART04G23870 Oryza barthii OBART04G23870 I
OB04G30790 Oryza brachyantha OB04G30790 I
ORGLA04G0204600 Oryza glaberrima ORGLA04G0204600 I
OGLUM04G23830 Oryza glumaepatula OGLUM04G23830 I
OSL Oryza indica BGIOSGA014428 I
OLONG_021167 Oryza longistaminata OLONG_021167 I
OMERI04G19760 Oryza meridionalis OMERI04G19760 I
ONIVA04G23030 Oryza nivara ONIVA04G23030 I
OPUNC04G21410 Oryza punctata OPUNC04G21410 I
ORUFI04G25610 Oryza rufipogon ORUFI04G25610 I
FL Oryza sativa OS04G0598300 I
Pavir.Gb00795 Panicum virgatum Pavir.Gb00795 I
Pavir.Ga00621 Panicum virgatum Pavir.Ga00621 I
estExt_fgenesh1_pg.C_740147 Physcomitrella patens estExt_fgenesh1_pg.C_740147 I
estExt_fgenesh1_pg.C_520047 Physcomitrella patens estExt_fgenesh1_pg.C_520047 N
FL Populus trichocarpa POPTR_0015s11820 I
Pm024610 Prunus mume Pm024610 I
PRUPE_ppa006372mg Prunus persica PRUPE_ppa006372mg I
30147.m014401 Ricinus communis 30147.m014401 I
SapurV1A.2394s0010 Salix purpurea SapurV1A.2394s0010 I
SELMODRAFT_85923 Selaginella moellendorffii SELMODRAFT_85923 I
Si011756m.g Setaria italica Si011756m.g I
Solyc03g118160.1 Solanum lycopersicum Solyc03g118160.1 I
Sb06g027340 Sorghum bicolor Sb06g027340 I
TCM_014768 Theobroma cacao TCM_014768 I
Traes_2AL_83D0D0C3F Triticum aestivum Traes_2AL_83D0D0C3F I
Traes_2BL_8DEC0EFBF Triticum aestivum Traes_2BL_8DEC0EFBF I
LFY Vitis vinifera VIT_17s0000g00150 I
GRMZM2G180190 Zea mays GRMZM2G180190 I
GRMZM2G098813 Zea mays GRMZM2G098813 I