Bo2g061130 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo2g061130 T267153_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HHO2
M02290_2.00 		Arabidopsis thaliana
NNKATHCNNN
NNNGDATMNN		 PBM
Weirauch et al.(2014)
pTH7115 		0.909 0.979
HHO2
M07029_2.00 		Arabidopsis thaliana
AKATTCY
RGAATMT		 Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a 		0.909 0.979
HHO2
M07030_2.00 		Arabidopsis thaliana
RDATYNNAGATTC
GAATCTNNRATHY		 Dap-seq
OMalley et al.(2016)
At1g68670_col 		0.909 0.979
HHO3
M02289_2.00 		Arabidopsis thaliana
NWGATWCBNN
NNVGWATCWN		 PBM
Weirauch et al.(2014)
pTH7278 		0.891 0.979
HHO3
M07016_2.00 		Arabidopsis thaliana
NNDHNNAAKATTCY
RGAATMTTNNDHNN		 Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a 		0.891 0.979
HHO3
M07017_2.00 		Arabidopsis thaliana
HNNAAKATTCY
RGAATMTTNND		 Dap-seq
OMalley et al.(2016)
At1g25550_col 		0.891 0.979
NIGT1
M02328_2.00 		Oryza sativa
NNKATHCNNN
NNNGDATMNN		 PBM
Weirauch et al.(2014)
pTH8646 		0.883 0.915
HHO6
M07024_2.00 		Arabidopsis thaliana
GAATCTNNDAT
ATHNNAGATTC		 Dap-seq
OMalley et al.(2016)
AT1G49560_col_a 		0.840 0.872
HHO6
M07025_2.00 		Arabidopsis thaliana
DGAATCTHNGATHCN
NGDATCNDAGATTCH		 Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a 		0.840 0.872
PK19779.1
M02354_2.00 		Cannabis sativa
NNKATNCNNN
NNNGNATMNN		 PBM
Weirauch et al.(2014)
pTH9610 		0.834 0.894
EFM
M07044_2.00 		Arabidopsis thaliana
NNGAATATTCY
RGAATATTCNN		 Dap-seq
OMalley et al.(2016)
At2g03500_col_a 		0.817 0.872
EFM
M07045_2.00 		Arabidopsis thaliana
RGAATCHWAGATTC
GAATCTWDGATTCY		 Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a 		0.817 0.872
PK14402.1
M02352_2.00 		Cannabis sativa
NDWGATTCSNN
NNSGAATCWHN		 PBM
Weirauch et al.(2014)
pTH9491 		0.782 0.830
HRS1
M02284_2.00 		Arabidopsis thaliana
AGATTCYN
NRGAATCT		 PBM
Weirauch et al.(2014)
pTH7118 		0.773 0.851
HRS1
M01068_2.00 		Arabidopsis thaliana
NAGATTCBNN
NNVGAATCTN		 PBM
Sullivan et al.(2014)
pTH7648 		0.773 0.851
HRS1
M07004_2.00 		Arabidopsis thaliana
NDDWWVNAAKATTCY
RGAATMTTNBWWHHN		 Dap-seq
OMalley et al.(2016)
At1g13300_col_a 		0.773 0.851
HHO5
M07112_2.00 		Arabidopsis thaliana
HNDAAGATTCH
DGAATCTTHND		 Dap-seq
OMalley et al.(2016)
AT4G37180_col_a 		0.696 0.809
HHO5
M07113_2.00 		Arabidopsis thaliana
NNDAAGATTCY
RGAATCTTHNN		 Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a 		0.696 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g061130.1 Myb 223 274

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000003318 Ailuropoda melanoleuca ENSAMEG00000003318 I
ENSAPLG00000004964 Anas platyrhynchos ENSAPLG00000004964 I
ENSAPLG00000007006 Anas platyrhynchos ENSAPLG00000007006 I
ENSAPLG00000011496 Anas platyrhynchos ENSAPLG00000011496 I
Afo_R015053 Aptenodytes forsteri Afo_R015053 I
ENSAMXG00000002880 Astyanax mexicanus ENSAMXG00000002880 I
ACEP23524 Atta cephalotes ACEP23524 I
ENSBTAP00000003668-D4 Bos grunniens ENSBTAP00000003668-D4 I
ENSP00000332973-D1 Bos grunniens ENSP00000332973-D1 I
estExt_fgenesh2_pg.C_1720042 Branchiostoma floridae estExt_fgenesh2_pg.C_1720042 I
estExt_gwp.C_540260 Branchiostoma floridae estExt_gwp.C_540260 I
Brh_R001114 Buceros rhinoceros Brh_R001114 I
Brh_R001115 Buceros rhinoceros Brh_R001115 I
SMAD3 Callithrix jacchus ENSCJAG00000002088 I
Aan_R002236 Calypte anna Aan_R002236 I
Aan_R005610 Calypte anna Aan_R005610 I
SMAD3 Canis familiaris ENSCAFG00000017388 I
CapteG167863 Capitella teleta CapteG167863 I
SMAD3 Cavia porcellus ENSCPOG00000021314 I
ENSCSAG00000013275 Chlorocebus sabaeus ENSCSAG00000013275 I
SMAD3 Choloepus hoffmanni ENSCHOG00000001562 I
ENSCING00000006188 Ciona intestinalis ENSCING00000006188 I
ENSCSAVG00000004749 Ciona savignyi ENSCSAVG00000004749 I
CGI_10014747 Crassostrea gigas CGI_10014747 I
CGI_10017370 Crassostrea gigas CGI_10017370 I
smad3b Danio rerio ENSDARG00000010207 I
smad3a Danio rerio ENSDARG00000036096 I
DAPPUDRAFT_314805 Daphnia pulex DAPPUDRAFT_314805 I
SMAD3 Dasypus novemcinctus ENSDNOG00000044090 I
SMAD9 Dasypus novemcinctus ENSDNOG00000048385 I
SMAD3 Echinops telfairi ENSETEG00000003356 I
ENSFALG00000012861 Ficedula albicollis ENSFALG00000012861 I
ENSGMOG00000001314 Gadus morhua ENSGMOG00000001314 I
ENSGMOG00000008364 Gadus morhua ENSGMOG00000008364 I
ENSGALG00000007870 Gallus gallus ENSGALG00000007870 I
ENSGALG00000014184 Gallus gallus ENSGALG00000014184 I
smad3b Gasterosteus aculeatus ENSGACG00000005092 I
ENSGACG00000017820 Gasterosteus aculeatus ENSGACG00000017820 I
Gfo_R005908 Geospiza fortis Gfo_R005908 I
Gfo_R012055 Geospiza fortis Gfo_R012055 I
HelroG185435 Helobdella robusta HelroG185435 I
SMAD3 Homo sapiens ENSG00000166949 D
XP_002157279.1 Hydra magnipapillata XP_002157279.1 I
XP_002160208.1 Hydra magnipapillata XP_002160208.1 I
ENSSTOG00000003788 Ictidomys tridecemlineatus ENSSTOG00000003788 I
ENSSTOG00000010286 Ictidomys tridecemlineatus ENSSTOG00000010286 I
ISCW001846 Ixodes scapularis ISCW001846 I
ENSLOCG00000013897 Lepisosteus oculatus ENSLOCG00000013897 I
ENSP00000332973 Macaca fascicularis ENSP00000332973 I
SMAD3 Macaca mulatta ENSMMUG00000015455 I
ENSMGAG00000001351 Meleagris gallopavo ENSMGAG00000001351 I
SMAD3 Microcebus murinus ENSMICG00000006119 I
ML011743a Mnemiopsis leidyi ML011743a I
SMAD3 Monodelphis domestica ENSMODG00000009609 I
Smad3 Mus musculus ENSMUSG00000032402 D
Myotis_brandtii_Smad3_10022298 Myotis brandtii Myotis_brandtii_Smad3_10022298 I
NV10880 Nasonia vitripennis NV10880 I
NEMVEDRAFT_v1g168041 Nematostella vectensis NEMVEDRAFT_v1g168041 I
ENSNLEG00000012983 Nomascus leucogenys ENSNLEG00000012983 I
SMAD3 Ochotona princeps ENSOPRG00000014996 I
ENSONIG00000004109 Oreochromis niloticus ENSONIG00000004109 I
ENSONIG00000013271 Oreochromis niloticus ENSONIG00000013271 I
ENSONIG00000015464 Oreochromis niloticus ENSONIG00000015464 I
smad3a Oryzias latipes ENSORLG00000002207 I
smad3b Oryzias latipes ENSORLG00000006803 I
ENSORLG00000011834 Oryzias latipes ENSORLG00000011834 I
SMAD3 Otolemur garnettii ENSOGAG00000014217 I
SMAD3 Pan troglodytes ENSPTRG00000007199 I
ENSPANG00000016627 Papio anubis ENSPANG00000016627 I
ENSPSIG00000010579 Pelodiscus sinensis ENSPSIG00000010579 I
ENSPMAG00000000489 Petromyzon marinus ENSPMAG00000000489 I
ENSPFOG00000002285 Poecilia formosa ENSPFOG00000002285 I
ENSPFOG00000004885 Poecilia formosa ENSPFOG00000004885 I
ENSPFOG00000006336 Poecilia formosa ENSPFOG00000006336 I
ENSPFOG00000008802 Poecilia formosa ENSPFOG00000008802 I
ENSPPYG00000006583 Pongo abelii ENSPPYG00000006583 I
SMAD3 Procavia capensis ENSPCAG00000008103 I
SMAD3 Pteropus vampyrus ENSPVAG00000002626 I
Smad3 Rattus norvegicus ENSRNOG00000008620 I
Sakowv30001252m.g Saccoglossus kowalevskii Sakowv30001252m.g I
ENSSHAG00000012543 Sarcophilus harrisii ENSSHAG00000012543 I
SMAD2 Sorex araneus ENSSARG00000003487 I
SMAR008230 Strigamia maritima SMAR008230 I
SPU_017642 Strongylocentrotus purpuratus SPU_017642 I
SPU_020722 Strongylocentrotus purpuratus SPU_020722 I
SPU_023107 Strongylocentrotus purpuratus SPU_023107 I
SMAD3 Taeniopygia guttata ENSTGUG00000009470 I
smad3b Takifugu rubripes ENSTRUG00000014802 I
smad3a Takifugu rubripes ENSTRUG00000016858 I
ENSTNIG00000004827 Tetraodon nigroviridis ENSTNIG00000004827 I
smad3b Tetraodon nigroviridis ENSTNIG00000008432 I
smad3a Tetraodon nigroviridis ENSTNIG00000009546 I
TriadG49742 Trichoplax adhaerens TriadG49742 I
TriadG50301 Trichoplax adhaerens TriadG50301 I
TMUE_s0005013500 Trichuris muris TMUE_s0005013500 I
ENSTBEG00000003884 Tupaia belangeri ENSTBEG00000003884 I
Tal_R001210 Tyto alba Tal_R001210 I
Tal_R011237 Tyto alba Tal_R011237 I
AAB39329 Xenopus laevis AAB39329 I
smad3.L Xenopus laevis XB-GENE-864816 I
smad2.S Xenopus laevis XB-GENE-864923 I
smad3 Xenopus tropicalis XB-GENE-481992 I
ENSXMAG00000002377 Xiphophorus maculatus ENSXMAG00000002377 I
ENSXMAG00000003553 Xiphophorus maculatus ENSXMAG00000003553 I
ENSXMAG00000004505 Xiphophorus maculatus ENSXMAG00000004505 I
L798_14024 Zootermopsis nevadensis L798_14024 I