Bra002533 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra002533 T267712_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.858 0.968
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra002533.1-P Myb 10 57
Bra002533.1-P Myb 63 108

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_06315 Aegilops tauschii F775_06315 I 0.709
F775_14172 Aegilops tauschii F775_14172 I 0.676
F775_23572 Aegilops tauschii F775_23572 I 0.686
F775_28589 Aegilops tauschii F775_28589 I 0.722
F775_29427 Aegilops tauschii F775_29427 I 0.708
AMTR_s00145p00098450 Amborella trichopoda AMTR_s00145p00098450 I 0.704
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I 0.858
ATMYB2 Arabidopsis lyrata fgenesh2_kg.4__2955__AT2G47190.1 I 0.674
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I 0.858
ATMYB2 Arabidopsis thaliana AT2G47190 I 0.674
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.858
MYB59 Arabidopsis thaliana AT5G59780 D 0.858
Bostr.25993s0044 Boechera stricta Bostr.25993s0044 I 0.674
BRADI2G62510 Brachypodium distachyon BRADI2G62510 I 0.736
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.700
Bo00954s080 Brassica oleracea Bo00954s080 I 0.674
Bo2g025410 Brassica oleracea Bo2g025410 I 0.858
Bo3g130340 Brassica oleracea Bo3g130340 I 0.830
Bo4g198510 Brassica oleracea Bo4g198510 I 0.674
Bo9g140750 Brassica oleracea Bo9g140750 I 0.879
Bra004473 Brassica rapa Bra004473 I 0.674
Bra006694 Brassica rapa Bra006694 I 0.840
Bra018223 Brassica rapa Bra018223 I 0.830
Bra020289 Brassica rapa Bra020289 I 0.858
Bra021389 Brassica rapa Bra021389 I 0.674
Cagra.6400s0003 Capsella grandiflora Cagra.6400s0003 I 0.674
Carubv10017875m.g Capsella rubella Carubv10017875m.g I 0.858
Carubv10023831m.g Capsella rubella Carubv10023831m.g I 0.674
evm.TU.supercontig_14.220 Carica papaya evm.TU.supercontig_14.220 I 0.661
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I 0.858
Ca_02593 Cicer arietinum Ca_02593 I 0.813
Cla008413 Citrullus lanatus Cla008413 I 0.817
Cla013488 Citrullus lanatus Cla013488 I 0.830
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.858
Cucsa.213500 Cucumis sativus Cucsa.213500 I 0.817
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.830
Thhalv10001584m.g Eutrema salsugineum Thhalv10001584m.g I 0.674
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I 0.858
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.858
GLYMA11G15180 Glycine max GLYMA11G15180 I 0.793
GLYMA12G07110 Glycine max GLYMA12G07110 I 0.802
GLYMA13G40830 Glycine max GLYMA13G40830 I 0.821
GLYMA15G04620 Glycine max GLYMA15G04620 I 0.821
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.855
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I 0.824
Gorai.009G413600 Gossypium raimondii Gorai.009G413600 I 0.666
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I 0.804
MLOC_52439 Hordeum vulgare MLOC_52439 I 0.709
MLOC_78504 Hordeum vulgare MLOC_78504 I 0.722
LPERR01G40120 Leersia perrieri LPERR01G40120 I 0.710
LPERR05G01030 Leersia perrieri LPERR05G01030 I 0.669
LPERR12G13390 Leersia perrieri LPERR12G13390 I 0.700
Lus10005886.g Linum usitatissimum Lus10005886.g I 0.846
Lus10009037.g Linum usitatissimum Lus10009037.g I 0.689
MDP0000143156 Malus domestica MDP0000143156 I 0.819
MDP0000177010 Malus domestica MDP0000177010 I 0.824
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I 0.846
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.813
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.811
mgf020363m Mimulus guttatus mgf020363m I 0.787
mgf025691m Mimulus guttatus mgf025691m I 0.787
GSMUA_Achr10G03710_001 Musa acuminata GSMUA_Achr10G03710_001 I 0.687
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I 0.746
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I 0.775
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I 0.752
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I 0.765
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I 0.731
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I 0.742
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I 0.755
GSMUA_Achr8G02640_001 Musa acuminata GSMUA_Achr8G02640_001 I 0.675
GSMUA_Achr8G34340_001 Musa acuminata GSMUA_Achr8G34340_001 I 0.697
GSMUA_Achr9G28370_001 Musa acuminata GSMUA_Achr9G28370_001 I 0.743
OBART01G45730 Oryza barthii OBART01G45730 I 0.710
OBART05G01080 Oryza barthii OBART05G01080 I 0.669
OB01G54920 Oryza brachyantha OB01G54920 I 0.735
OB05G11070 Oryza brachyantha OB05G11070 I 0.669
OB11G27690 Oryza brachyantha OB11G27690 I 0.677
OB12G23080 Oryza brachyantha OB12G23080 I 0.700
ORGLA01G0394700 Oryza glaberrima ORGLA01G0394700 I 0.710
ORGLA11G0187400 Oryza glaberrima ORGLA11G0187400 I 0.722
ORGLA12G0141600 Oryza glaberrima ORGLA12G0141600 I 0.700
ORGLA12G0206100 Oryza glaberrima ORGLA12G0206100 I 0.700
OGLUM05G01090 Oryza glumaepatula OGLUM05G01090 I 0.669
BGIOSGA005283 Oryza indica BGIOSGA005283 I 0.710
BGIOSGA019054 Oryza indica BGIOSGA019054 I 0.669
BGIOSGA033532 Oryza indica BGIOSGA033532 I 0.722
BGIOSGA035986 Oryza indica BGIOSGA035986 I 0.700
OLONG_004480 Oryza longistaminata OLONG_004480 I 0.669
OMERI05G01150 Oryza meridionalis OMERI05G01150 I 0.669
ONIVA05G01120 Oryza nivara ONIVA05G01120 I 0.669
OPUNC01G44650 Oryza punctata OPUNC01G44650 I 0.710
OPUNC05G00970 Oryza punctata OPUNC05G00970 I 0.669
ORUFI01G49220 Oryza rufipogon ORUFI01G49220 I 0.710
ORUFI05G01110 Oryza rufipogon ORUFI05G01110 I 0.669
ORUFI11G25190 Oryza rufipogon ORUFI11G25190 I 0.722
ORUFI12G17930 Oryza rufipogon ORUFI12G17930 I 0.700
MYBAS1 Oryza sativa OS11G0700500 I 0.722
MYBAS2 Oryza sativa OS12G0567300 I 0.700
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I 0.700
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I 0.682
Pavir.Hb00058 Panicum virgatum Pavir.Hb00058 I 0.727
Pavir.J08441 Panicum virgatum Pavir.J08441 I 0.727
Pavir.J11500 Panicum virgatum Pavir.J11500 I 0.700
Pavir.J11826 Panicum virgatum Pavir.J11826 I 0.692
Pavir.J33560 Panicum virgatum Pavir.J33560 I 0.727
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I 0.855
POPTR_0008s17350 Populus trichocarpa POPTR_0008s17350 I 0.663
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I 0.815
Pm000809 Prunus mume Pm000809 I 0.824
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I 0.824
29788.m000340 Ricinus communis 29788.m000340 I 0.846
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I 0.830
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I 0.830
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.815
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.815
Si023104m.g Setaria italica Si023104m.g I 0.700
Si026803m.g Setaria italica Si026803m.g I 0.727
Solyc06g005330.2 Solanum lycopersicum Solyc06g005330.2 I 0.757
Solyc11g073120.1 Solanum lycopersicum Solyc11g073120.1 I 0.768
PGSC0003DMG400015536 Solanum tuberosum PGSC0003DMG400015536 I 0.768
Sb05g027360 Sorghum bicolor Sb05g027360 I 0.677
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.700
TCM_041904 Theobroma cacao TCM_041904 I 0.858
Traes_1BS_B44ECE28C Triticum aestivum Traes_1BS_B44ECE28C I 0.676
Traes_1DS_47E2D90AC1 Triticum aestivum Traes_1DS_47E2D90AC1 I 0.676
Traes_1DS_47E2D90AC Triticum aestivum Traes_1DS_47E2D90AC I 0.676
Traes_3AL_A8AF980F3 Triticum aestivum Traes_3AL_A8AF980F3 I 0.708
TRAES3BF065400010CFD_g Triticum aestivum TRAES3BF065400010CFD_g I 0.708
Traes_4AL_8B52D54FD Triticum aestivum Traes_4AL_8B52D54FD I 0.714
Traes_4BS_61B30E3E4 Triticum aestivum Traes_4BS_61B30E3E4 I 0.722
Traes_4DS_0ECE7A421 Triticum aestivum Traes_4DS_0ECE7A421 I 0.722
Traes_6AL_89BA7115C Triticum aestivum Traes_6AL_89BA7115C I 0.686
Traes_6DL_FDFCBA57D1 Triticum aestivum Traes_6DL_FDFCBA57D1 I 0.686
Traes_6DL_FDFCBA57D Triticum aestivum Traes_6DL_FDFCBA57D I 0.686
TRIUR3_16687 Triticum urartu TRIUR3_16687 I 0.722
TRIUR3_16862 Triticum urartu TRIUR3_16862 I 0.709
TRIUR3_22432 Triticum urartu TRIUR3_22432 I 0.708
TRIUR3_31527 Triticum urartu TRIUR3_31527 I 0.686
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I 0.794
GRMZM2G047626 Zea mays GRMZM2G047626 I 0.700
GRMZM2G048136 Zea mays GRMZM2G048136 I 0.704
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.700