GSMUA_Achr3G08370_001 (Musa acuminata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 GSMUA_Achr3G08370_001 T272383_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.785 0.839
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.753 0.774
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.753 0.774
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.719 0.817
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.711 0.731
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.711 0.731
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.699 0.667
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.694 0.785
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.687 0.753
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.687 0.753
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.687 0.753
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.667 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr3P08370_001 Myb 23 70
GSMUA_Achr3P08370_001 Myb 76 121

Links

Other Myb/SANT family TFs
Other Musa acuminata TFs

726 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g08576 Acanthocheilonema viteae nAv.1.0.1.g08576 N
ACOC_0000909601 Angiostrongylus costaricensis ACOC_0000909601 N
ASIM_0001061401 Anisakis simplex ASIM_0001061401 N
ASU_13814 Ascaris suum ASU_13814 N
Bm4196 Brugia malayi Bm4196 N
BTMF_0001047601 Brugia timori BTMF_0001047601 N
BXY_0116700 Bursaphelenchus xylophilus BXY_0116700 N
CBN28426 Caenorhabditis brenneri CBN28426 N
CBG14076 Caenorhabditis briggsae CBG14076 N
npax-2 Caenorhabditis elegans WBGene00018591 N
CJA16887 Caenorhabditis japonica CJA16887 N
CRE00936 Caenorhabditis remanei CRE00936 N
DICVIV_06612 Dictyocaulus viviparus DICVIV_06612 N
nDi.2.2.2.g00913 Dirofilaria immitis nDi.2.2.2.g00913 N
EVEC_0001355301 Enterobius vermicularis EVEC_0001355301 N
GPLIN_001118300 Globodera pallida GPLIN_001118300 N
HPLM_0000886801 Haemonchus placei HPLM_0000886801 N
nLs.2.1.2.g06387 Litomosoides sigmodontis nLs.2.1.2.g06387 N
LOAG_16508 Loa loa LOAG_16508 N
maker-nMf.1.1.scaf01187-augustus-gene-0.14 Meloidogyne floridensis maker-nMf.1.1.scaf01187-augustus-gene-0.14 N
NECAME_03708 Necator americanus NECAME_03708 N
NBR_0000487701 Nippostrongylus brasiliensis NBR_0000487701 N
nOo.2.0.1.g07401 Onchocerca ochengi nOo.2.0.1.g07401 N
WBGene00239907 Onchocerca volvulus WBGene00239907 N
PTRK_0001095200 Parastrongyloides trichosuri PTRK_0001095200 N
scaffold1066-EXSNAP2012.3 Pristionchus exspectatus scaffold1066-EXSNAP2012.3 N
Ppa-npax-4 Pristionchus pacificus PPA03062 N
RSKR_0000509700 Rhabditophanes kr3021 RSKR_0000509700 N
L596_g148 Steinernema carpocapsae L596_g148 N
L889_g31190 Steinernema feltiae L889_g31190 N
L893_g14515 Steinernema glaseri L893_g14515 N
L898_g33187 Steinernema monticolum L898_g33187 N
L892_g12859 Steinernema scapterisci L892_g12859 N
SPAL_0000243500 Strongyloides papillosus SPAL_0000243500 N
SSTP_0000993700 Strongyloides stercoralis SSTP_0000993700 N
SVE_0001100 Strongyloides venezuelensis SVE_0001100 N
SMUV_0000429701 Syphacia muris SMUV_0000429701 N
TCNE_0000151101 Toxocara canis TCNE_0000151101 N
TCNE_0000252101 Toxocara canis TCNE_0000252101 N
WUBG_05014 Wuchereria bancrofti WUBG_05014 N