OGLUM05G04280 (Oryza glumaepatula)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 OGLUM05G04280 T275729_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.748 0.696
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.748 0.696
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.723 0.696
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.723 0.696
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.715 0.696
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.664 0.696
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.664 0.696
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.664 0.696
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.664 0.696
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.664 0.674
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.664 0.674
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.664 0.674
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM05G04280.1 Myb 27 72

Links

Other Myb/SANT family TFs
Other Oryza glumaepatula TFs

324 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10028391m.g Capsella rubella Carubv10028391m.g I 0.000
Ca_12172 Cicer arietinum Ca_12172 I 0.000
Ca_02034 Cicer arietinum Ca_02034 I 0.000
Ciclev10027184m.g Citrus clementina Ciclev10027184m.g I 0.000
Eucgr.I00022 Eucalyptus grandis Eucgr.I00022 I 0.000
gene14755-v1.0-hybrid Fragaria vesca gene14755-v1.0-hybrid I 0.000
GLYMA20G35690 Glycine max GLYMA20G35690 I 0.000
Gorai.012G046200 Gossypium raimondii Gorai.012G046200 I 0.000
LPERR02G24020 Leersia perrieri LPERR02G24020 I 0.000
Lus10015900.g Linum usitatissimum Lus10015900.g I 0.000
MDP0000804580 Malus domestica MDP0000804580 I 0.000
cassava39895.m1 Manihot esculenta cassava39895.m1 I 0.000
mgf024641m Mimulus guttatus mgf024641m I 0.000
mgf026503m Mimulus guttatus mgf026503m I 0.000
OGLUM02G30190 Oryza glumaepatula OGLUM02G30190 I 0.000
OMERI02G28440 Oryza meridionalis OMERI02G28440 I 0.000
OPUNC02G27120 Oryza punctata OPUNC02G27120 I 0.000
Q0DYA2_ORYSJ Oryza sativa Q0DYA2_ORYSJ I 0.000
ZHD7 Oryza sativa OS02G0706600 D 0.000
Pavir.Ab02855 Panicum virgatum Pavir.Ab02855 I 0.000
Pavir.Aa00802 Panicum virgatum Pavir.Aa00802 I 0.000
POPTR_0004s14270 Populus trichocarpa POPTR_0004s14270 I 0.000
PRUPE_ppa020272mg Prunus persica PRUPE_ppa020272mg I 0.000
29983.m003297 Ricinus communis 29983.m003297 I 0.000
SapurV1A.0185s0100 Salix purpurea SapurV1A.0185s0100 I 0.000
SELMODRAFT_59936 Selaginella moellendorffii SELMODRAFT_59936 I 0.000
SELMODRAFT_49899 Selaginella moellendorffii SELMODRAFT_49899 I 0.000
Si020227m.g Setaria italica Si020227m.g I 0.000
Sb04g030480 Sorghum bicolor Sb04g030480 I 0.000
TCM_001660 Theobroma cacao TCM_001660 I 0.000
GRMZM2G069365 Zea mays GRMZM2G069365 I 0.000