POPTR_0010s20990 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0010s20990 T278403_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.839 0.915
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.821 0.894
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.821 0.894
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.813 0.872
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.813 0.872
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s20990.1 Myb 593 643
POPTR_0010s20990.2 Myb 575 625
POPTR_0010s20990.4 Myb 582 632
POPTR_0010s20990.5 Myb 591 641

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_10373 Aegilops tauschii F775_10373 I 0.779
F775_17181 Aegilops tauschii F775_17181 I 0.821
AMTR_s00009p00107000 Amborella trichopoda AMTR_s00009p00107000 I 0.821
AMTR_s00012p00239180 Amborella trichopoda AMTR_s00012p00239180 I 0.831
Aquca_003_00096 Aquilegia coerulea Aquca_003_00096 I 0.813
Aquca_009_00956 Aquilegia coerulea Aquca_009_00956 I 0.821
TRFL2 Arabidopsis lyrata Al_scaffold_0001_698 I 0.821
TRFL4 Arabidopsis lyrata Al_scaffold_0005_2280 I 0.813
TRFL9 Arabidopsis lyrata fgenesh2_kg.3__1313__AT3G12560.1 I 0.881
TRFL1 Arabidopsis lyrata fgenesh2_kg.5__1021__AT3G46590.3 I 0.813
TBP1 Arabidopsis lyrata fgenesh2_kg.6__1339__AT5G13820.1 I 0.891
ATTRP1 Arabidopsis lyrata fgenesh2_kg.8__1886__AT5G59430.4 I 0.839
TRP5 Arabidopsis thaliana AT1G07540 D 0.821
TRP3 Arabidopsis thaliana AT3G12560 I 0.881
TRP2 Arabidopsis thaliana AT3G46590 D 0.813
TRFL4 Arabidopsis thaliana AT3G53790 I 0.813
TRP4 Arabidopsis thaliana AT5G13820 I 0.891
TRP1 Arabidopsis thaliana AT5G59430 D 0.839
Bostr.18473s0300 Boechera stricta Bostr.18473s0300 I 0.813
Bostr.25219s0206 Boechera stricta Bostr.25219s0206 I 0.821
Bostr.26833s0301 Boechera stricta Bostr.26833s0301 I 0.821
Bostr.2902s0116 Boechera stricta Bostr.2902s0116 I 0.891
Bostr.3640s0028 Boechera stricta Bostr.3640s0028 I 0.881
BRADI1G66677 Brachypodium distachyon BRADI1G66677 I 0.821
BRADI2G62170 Brachypodium distachyon BRADI2G62170 I 0.779
Bo01118s020 Brassica oleracea Bo01118s020 I 0.821
Bo1g139150 Brassica oleracea Bo1g139150 I 0.881
Bo2g011570 Brassica oleracea Bo2g011570 I 0.891
Bo3g009370 Brassica oleracea Bo3g009370 I 0.891
Bo4g120560 Brassica oleracea Bo4g120560 I 0.701
Bo5g008270 Brassica oleracea Bo5g008270 I 0.772
Bo5g133380 Brassica oleracea Bo5g133380 I 0.881
Bo9g139390 Brassica oleracea Bo9g139390 I 0.813
Bo9g166400 Brassica oleracea Bo9g166400 I 0.891
Bra002566 Brassica rapa Bra002566 I 0.813
Bra006218 Brassica rapa Bra006218 I 0.891
Bra008800 Brassica rapa Bra008800 I 0.891
Bra015585 Brassica rapa Bra015585 I 0.772
Bra023437 Brassica rapa Bra023437 I 0.891
Bra030689 Brassica rapa Bra030689 I 0.821
Bra034751 Brassica rapa Bra034751 I 0.881
Bra038729 Brassica rapa Bra038729 I 0.881
PK21687.1 Cannabis sativa PK21687.1 D 0.821
Cagra.0448s0008 Capsella grandiflora Cagra.0448s0008 I 0.813
Cagra.1317s0071 Capsella grandiflora Cagra.1317s0071 I 0.821
Cagra.1671s0374 Capsella grandiflora Cagra.1671s0374 I 0.821
Cagra.5588s0009 Capsella grandiflora Cagra.5588s0009 I 0.871
Cagra.5641s0019 Capsella grandiflora Cagra.5641s0019 I 0.881
Carubv10000426m.g Capsella rubella Carubv10000426m.g I 0.871
Carubv10011259m.g Capsella rubella Carubv10011259m.g I 0.821
Carubv10013179m.g Capsella rubella Carubv10013179m.g I 0.881
Carubv10016934m.g Capsella rubella Carubv10016934m.g I 0.813
Carubv10018629m.g Capsella rubella Carubv10018629m.g I 0.724
Carubv10026172m.g Capsella rubella Carubv10026172m.g I 0.821
evm.TU.supercontig_1.421 Carica papaya evm.TU.supercontig_1.421 I 0.881
evm.TU.supercontig_81.127 Carica papaya evm.TU.supercontig_81.127 I 0.821
Ca_02624 Cicer arietinum Ca_02624 I 0.821
Ca_13309 Cicer arietinum Ca_13309 I 0.881
Ca_16107 Cicer arietinum Ca_16107 I 0.891
Ca_21136 Cicer arietinum Ca_21136 I 0.813
Cla004068 Citrullus lanatus Cla004068 I 0.873
Cla008361 Citrullus lanatus Cla008361 I 0.821
Cla013524 Citrullus lanatus Cla013524 I 0.732
Ciclev10027927m.g Citrus clementina Ciclev10027927m.g I 0.821
Ciclev10030878m.g Citrus clementina Ciclev10030878m.g I 0.891
orange1.1g042386m.g Citrus sinensis orange1.1g042386m.g I 0.821
Cucsa.117790 Cucumis sativus Cucsa.117790 I 0.821
Cucsa.138770 Cucumis sativus Cucsa.138770 I 0.732
Cucsa.165230 Cucumis sativus Cucsa.165230 I 0.873
Eucgr.B02351 Eucalyptus grandis Eucgr.B02351 I 0.821
Eucgr.J01245 Eucalyptus grandis Eucgr.J01245 I 0.881
Thhalv10002472m.g Eutrema salsugineum Thhalv10002472m.g I 0.813
Thhalv10007062m.g Eutrema salsugineum Thhalv10007062m.g I 0.821
Thhalv10011058m.g Eutrema salsugineum Thhalv10011058m.g I 0.813
Thhalv10012893m.g Eutrema salsugineum Thhalv10012893m.g I 0.891
Thhalv10013086m.g Eutrema salsugineum Thhalv10013086m.g I 0.821
Thhalv10020283m.g Eutrema salsugineum Thhalv10020283m.g I 0.881
gene02230-v1.0-hybrid Fragaria vesca gene02230-v1.0-hybrid I 0.813
gene18432-v1.0-hybrid Fragaria vesca gene18432-v1.0-hybrid I 0.813
gene26492-v1.0-hybrid Fragaria vesca gene26492-v1.0-hybrid I 0.839
GLYMA07G15940 Glycine max GLYMA07G15940 I 0.813
GLYMA11G14760 Glycine max GLYMA11G14760 I 0.839
GLYMA11G34050 Glycine max GLYMA11G34050 I 0.881
GLYMA12G06680 Glycine max GLYMA12G06680 I 0.831
GLYMA13G41210 Glycine max GLYMA13G41210 I 0.821
GLYMA15G04200 Glycine max GLYMA15G04200 I 0.821
GLYMA18G04251 Glycine max GLYMA18G04251 I 0.881
GLYMA18G39911 Glycine max GLYMA18G39911 I 0.813
Gorai.003G130700 Gossypium raimondii Gorai.003G130700 I 0.821
Gorai.006G172000 Gossypium raimondii Gorai.006G172000 I 0.821
Gorai.009G098300 Gossypium raimondii Gorai.009G098300 I 0.767
Gorai.010G200900 Gossypium raimondii Gorai.010G200900 I 0.786
Gorai.011G266100 Gossypium raimondii Gorai.011G266100 I 0.881
Gorai.013G021300 Gossypium raimondii Gorai.013G021300 I 0.881
MLOC_57410 Hordeum vulgare MLOC_57410 I 0.779
MLOC_59817 Hordeum vulgare MLOC_59817 I 0.821
LPERR02G30830 Leersia perrieri LPERR02G30830 I 0.764
LPERR03G10840 Leersia perrieri LPERR03G10840 I 0.821
Lus10000947.g Linum usitatissimum Lus10000947.g I 0.891
Lus10002704.g Linum usitatissimum Lus10002704.g I 0.891
Lus10010844.g Linum usitatissimum Lus10010844.g I 0.821
Lus10024385.g Linum usitatissimum Lus10024385.g I 0.821
Lus10040285.g Linum usitatissimum Lus10040285.g I 0.891
LjSGA_017694.1 Lotus japonicus LjSGA_017694.1 I 0.755
LjSGA_019393.1 Lotus japonicus LjSGA_019393.1 I 0.891
MDP0000119184 Malus domestica MDP0000119184 I 0.891
MDP0000137531 Malus domestica MDP0000137531 I 0.821
MDP0000209974 Malus domestica MDP0000209974 I 0.821
cassava19451.valid.m1 Manihot esculenta cassava19451.valid.m1 I 0.821
cassava19452.valid.m1 Manihot esculenta cassava19452.valid.m1 I 0.821
cassava19453.valid.m1 Manihot esculenta cassava19453.valid.m1 I 0.821
cassava30955.valid.m1 Manihot esculenta cassava30955.valid.m1 I 0.821
cassava31336.valid.m1 Manihot esculenta cassava31336.valid.m1 I 0.831
MTR_2g097290 Medicago truncatula MTR_2g097290 I 0.821
MTR_3g067935 Medicago truncatula MTR_3g067935 I 0.881
MTR_5g080010 Medicago truncatula MTR_5g080010 I 0.881
MTR_7g061840 Medicago truncatula MTR_7g061840 I 0.813
mgf005791m Mimulus guttatus mgf005791m I 0.821
mgf007893m Mimulus guttatus mgf007893m I 0.813
GSMUA_Achr10G22620_001 Musa acuminata GSMUA_Achr10G22620_001 I 0.839
GSMUA_Achr7G15090_001 Musa acuminata GSMUA_Achr7G15090_001 I 0.821
GSMUA_Achr8G20810_001 Musa acuminata GSMUA_Achr8G20810_001 I 0.839
GSMUA_Achr9G03910_001 Musa acuminata GSMUA_Achr9G03910_001 I 0.821
OBART02G37370 Oryza barthii OBART02G37370 I 0.764
OBART03G12240 Oryza barthii OBART03G12240 I 0.821
OB02G44060 Oryza brachyantha OB02G44060 I 0.764
OB03G22340 Oryza brachyantha OB03G22340 I 0.821
ORGLA02G0325900 Oryza glaberrima ORGLA02G0325900 I 0.764
ORGLA03G0118300 Oryza glaberrima ORGLA03G0118300 I 0.821
OGLUM02G38510 Oryza glumaepatula OGLUM02G38510 I 0.764
OGLUM03G12230 Oryza glumaepatula OGLUM03G12230 I 0.821
BGIOSGA005358 Oryza indica BGIOSGA005358 I 0.764
BGIOSGA012326 Oryza indica BGIOSGA012326 I 0.821
OLONG_013725 Oryza longistaminata OLONG_013725 I 0.764
OLONG_025333 Oryza longistaminata OLONG_025333 I 0.821
OMERI01G33350 Oryza meridionalis OMERI01G33350 I 0.764
OMERI03G11490 Oryza meridionalis OMERI03G11490 I 0.821
ONIVA02G40130 Oryza nivara ONIVA02G40130 I 0.764
ONIVA11G13450 Oryza nivara ONIVA11G13450 I 0.821
OPUNC02G34540 Oryza punctata OPUNC02G34540 I 0.764
OPUNC03G11810 Oryza punctata OPUNC03G11810 I 0.821
ORUFI02G38880 Oryza rufipogon ORUFI02G38880 I 0.764
ORUFI03G12870 Oryza rufipogon ORUFI03G12870 I 0.821
OS03G0274300 Oryza sativa OS03G0274300 I 0.821
Pavir.Ea04142 Panicum virgatum Pavir.Ea04142 I 0.800
Pavir.Gb01315 Panicum virgatum Pavir.Gb01315 I 0.813
Pavir.Ia03771 Panicum virgatum Pavir.Ia03771 I 0.821
Pavir.J14051 Panicum virgatum Pavir.J14051 I 0.753
Pavir.J18132 Panicum virgatum Pavir.J18132 I 0.821
e_gw1.132.51.1 Physcomitrella patens e_gw1.132.51.1 I 0.821
gw1.98.100.1 Physcomitrella patens gw1.98.100.1 I 0.813
POPTR_0001s24840 Populus trichocarpa POPTR_0001s24840 I 0.821
POPTR_0006s08680 Populus trichocarpa POPTR_0006s08680 I 0.821
POPTR_0008s05740 Populus trichocarpa POPTR_0008s05740 I 0.891
POPTR_0009s03730 Populus trichocarpa POPTR_0009s03730 I 0.821
Pm000720 Prunus mume Pm000720 I 0.821
Pm002686 Prunus mume Pm002686 I 0.821
Pm018821 Prunus mume Pm018821 I 0.881
PRUPE_ppa002374mg Prunus persica PRUPE_ppa002374mg I 0.881
PRUPE_ppa002403mg Prunus persica PRUPE_ppa002403mg I 0.821
PRUPE_ppa002522mg Prunus persica PRUPE_ppa002522mg I 0.821
28880.m000016 Ricinus communis 28880.m000016 I 0.821
SapurV1A.0040s0420 Salix purpurea SapurV1A.0040s0420 I 0.821
SapurV1A.0041s0150 Salix purpurea SapurV1A.0041s0150 I 0.821
SapurV1A.0281s0030 Salix purpurea SapurV1A.0281s0030 I 0.909
SapurV1A.0451s0070 Salix purpurea SapurV1A.0451s0070 I 0.891
SELMODRAFT_121021 Selaginella moellendorffii SELMODRAFT_121021 I 0.772
SELMODRAFT_123062 Selaginella moellendorffii SELMODRAFT_123062 I 0.772
SELMODRAFT_131544 Selaginella moellendorffii SELMODRAFT_131544 I 0.698
Si000591m.g Setaria italica Si000591m.g I 0.813
Si009551m.g Setaria italica Si009551m.g I 0.795
Si016548m.g Setaria italica Si016548m.g I 0.821
Si034524m.g Setaria italica Si034524m.g I 0.821
Solyc04g011650.2 Solanum lycopersicum Solyc04g011650.2 I 0.793
Solyc05g054410.2 Solanum lycopersicum Solyc05g054410.2 I 0.813
Solyc06g005590.2 Solanum lycopersicum Solyc06g005590.2 I 0.813
Solyc06g076270.2 Solanum lycopersicum Solyc06g076270.2 I 0.821
PGSC0003DMG400002138 Solanum tuberosum PGSC0003DMG400002138 I 0.813
PGSC0003DMG400006353 Solanum tuberosum PGSC0003DMG400006353 I 0.811
PGSC0003DMG400023432 Solanum tuberosum PGSC0003DMG400023432 I 0.813
PGSC0003DMG400030324 Solanum tuberosum PGSC0003DMG400030324 I 0.821
Sb01g039650 Sorghum bicolor Sb01g039650 I 0.821
Sb06g019970 Sorghum bicolor Sb06g019970 I 0.813
TCM_021921 Theobroma cacao TCM_021921 I 0.821
TCM_041816 Theobroma cacao TCM_041816 I 0.821
TCM_042704 Theobroma cacao TCM_042704 I 0.881
TRAES3BF045500220CFD_g Triticum aestivum TRAES3BF045500220CFD_g I 0.779
Traes_4AS_FA7E65184 Triticum aestivum Traes_4AS_FA7E65184 I 0.821
Traes_4BL_AB2636FB0 Triticum aestivum Traes_4BL_AB2636FB0 I 0.821
Traes_4DL_3849A9A5F Triticum aestivum Traes_4DL_3849A9A5F I 0.821
TRIUR3_18647 Triticum urartu TRIUR3_18647 I 0.821
VIT_06s0004g04940 Vitis vinifera VIT_06s0004g04940 I 0.821
TRFL4 Vitis vinifera VIT_08s0007g00500 I 0.839
VIT_13s0019g01670 Vitis vinifera VIT_13s0019g01670 I 0.881
GRMZM2G063151 Zea mays GRMZM2G063151 I 0.821
GRMZM2G110309 Zea mays GRMZM2G110309 I 0.821
GRMZM2G133016 Zea mays GRMZM2G133016 I 0.813