POPTR_0011s12750 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0011s12750 T278413_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.754 0.871
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.740 0.806
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.740 0.806
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.727 0.849
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.727 0.849
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.723 0.806
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.723 0.806
AtMYB41
M07109_2.00 		Arabidopsis thaliana
DHDBBYYACCTAMYW
WRKTAGGTRRVVHDH		 Dap-seq
OMalley et al.(2016)
MYB41_col_a 		0.712 0.839
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.704 0.774
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.699 0.753
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.699 0.753
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.682 0.828
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.682 0.828
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.666 0.742
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.666 0.742
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.662 0.710
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.661 0.699
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.661 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s12750.1 Myb 14 61
POPTR_0011s12750.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

730 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g05112 Acanthocheilonema viteae nAv.1.0.1.g05112 N
ENSAPLG00000004964 Anas platyrhynchos ENSAPLG00000004964 I
ANCDUO_02619 Ancylostoma duodenale ANCDUO_02619 N
ASU_06962 Ascaris suum ASU_06962 N
Bm7459 Brugia malayi Bm7459 N
BTMF_0000953701 Brugia timori BTMF_0000953701 N
BXY_1512700 Bursaphelenchus xylophilus BXY_1512700 N
CBG06922 Caenorhabditis briggsae CBG06922 N
sma-2 Caenorhabditis elegans WBGene00004856 N
CRE15772 Caenorhabditis remanei CRE15772 N
SMAD9 Cavia porcellus ENSCPOG00000010255 I
smad9 Danio rerio ENSDARG00000021938 I
nDi.2.2.2.g00640 Dirofilaria immitis nDi.2.2.2.g00640 N
DME_0000390001 Dracunculus medinensis DME_0000390001 N
EEL_0000068901 Elaeophora elaphi EEL_0000068901 N
EVEC_0000636701 Enterobius vermicularis EVEC_0000636701 N
HCOI01543700 Haemonchus contortus HCOI01543700 N
HCOI00251100 Haemonchus contortus HCOI00251100 N
HPBE_0002664601 Heligmosomoides bakeri HPBE_0002664601 N
Hba_13214 Heterorhabditis bacteriophora Hba_13214 N
SMAD3 Homo sapiens ENSG00000166949 D
ENSLOCG00000008478 Lepisosteus oculatus ENSLOCG00000008478 I
nLs.2.1.2.g02003 Litomosoides sigmodontis nLs.2.1.2.g02003 N
LOAG_01471 Loa loa LOAG_01471 N
ENSMGAG00000001351 Meleagris gallopavo ENSMGAG00000001351 I
maker-nMf.1.1.scaf00076-augustus-gene-0.21 Meloidogyne floridensis maker-nMf.1.1.scaf00076-augustus-gene-0.21 N
Minc06478 Meloidogyne incognita Minc06478 N
NECAME_19535 Necator americanus NECAME_19535 N
NBR_0000271401 Nippostrongylus brasiliensis NBR_0000271401 N
NBR_0000522801 Nippostrongylus brasiliensis NBR_0000522801 I
SMAD1 Ochotona princeps ENSOPRG00000012775 I
OFLC_0000052301 Onchocerca flexuosa OFLC_0000052301 N
nOo.2.0.1.g00974 Onchocerca ochengi nOo.2.0.1.g00974 N
WBGene00245189 Onchocerca volvulus WBGene00245189 N
PTRK_0000297300 Parastrongyloides trichosuri PTRK_0000297300 N
Ppa-sma-2 Pristionchus pacificus PPA15247 N
RSKR_0000082500 Rhabditophanes kr3021 RSKR_0000082500 N
Sakowv30032201m.g Saccoglossus kowalevskii Sakowv30032201m.g I
L596_g26009 Steinernema carpocapsae L596_g26009 N
L893_g15060 Steinernema glaseri L893_g15060 N
L898_g14583 Steinernema monticolum L898_g14583 N
L892_g4529 Steinernema scapterisci L892_g4529 N
SSTP_0000571600 Strongyloides stercoralis SSTP_0000571600 N
SVE_0161800 Strongyloides venezuelensis SVE_0161800 N
SMUV_0000477801 Syphacia muris SMUV_0000477801 N
TCLT_0000791701 Thelazia callipaeda TCLT_0000791701 N
WUBG_02400 Wuchereria bancrofti WUBG_02400 N
L798_03803 Zootermopsis nevadensis L798_03803 I