snpc-4 (Caenorhabditis elegans)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 WBGene00001568 T282143_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
snpc-4
M08151_2.00		 Caenorhabditis elegans
RGCRGCCGACAY
RTGTCGGCYGCY		 ChIP-seq
Mathelier et al.(2014)
MA0544.1		 (Direct) (Direct)
snpc-4
M08216_2.00		 Caenorhabditis elegans
TGAAACAGWDDWWWWT
AWWWWHHWCTGTTTCA		 ChIP-seq
Contrino et al.(2012)
Mw151		 (Direct) (Direct)
snpc-4
M09602_2.00		 Caenorhabditis elegans
CCCGBRARDTGTCGG
CCGACAHYTYVCGGG		 Misc
Heinz et al.(2010)
cElegans-L4-GEI11_modEncode		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
F32H2.1a Myb 250 296
F32H2.1a Myb 301 350
F32H2.1a Myb 409 455
F32H2.1b Myb 250 296
F32H2.1b Myb 301 350
F32H2.1b Myb 409 455

Links

Other Myb/SANT family TFs
Other Caenorhabditis elegans TFs

1 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.8__1135__AT5G52510.1 Arabidopsis lyrata fgenesh2_kg.8__1135__AT5G52510.1 N
SCL8 Arabidopsis thaliana AT5G52510 N
Bostr.7305s0021 Boechera stricta Bostr.7305s0021 N
Bo2g047700 Brassica oleracea Bo2g047700 N
Bo9g083130 Brassica oleracea Bo9g083130 N
Bra022596 Brassica rapa Bra022596 N
Bra028312 Brassica rapa Bra028312 N
Cagra.4170s0002 Capsella grandiflora Cagra.4170s0002 N
Carubv10026035m.g Capsella rubella Carubv10026035m.g N
Thhalv10012936m.g Eutrema salsugineum Thhalv10012936m.g N