Carubv10001378m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10001378m.g T286216_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB43
M07127_2.00 		Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB43_col_a 		0.884 0.978
PK21166.1
M01281_2.00 		Cannabis sativa
HACCWAMY
RKTWGGTD		 PBM
Lambert et al.(2019)
pTH11255 		0.814 0.935
MYB99
M07151_2.00 		Arabidopsis thaliana
NYYYACCWAMYHH
DDRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB99_col_a 		0.683 0.742
MYB99
M07152_2.00 		Arabidopsis thaliana
YHYACCTAMYH
DRKTAGGTRDR		 Dap-seq
OMalley et al.(2016)
MYB99_colamp_a 		0.683 0.742
AtMYB40
M07126_2.00 		Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB40_col_a 		0.663 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001378m Myb 14 61
Carubv10001378m Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

351 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g03795 Acanthocheilonema viteae nAv.1.0.1.g03795 N
ASU_05625 Ascaris suum ASU_05625 I
Bm6032 Brugia malayi Bm6032 N
CBN11476 Caenorhabditis brenneri CBN11476 I
CBG07058 Caenorhabditis briggsae CBG07058 I
CBG24273 Caenorhabditis briggsae CBG24273 I
mab-9 Caenorhabditis elegans WBGene00003106 I
CJA32610 Caenorhabditis japonica CJA32610 I
CRE18119 Caenorhabditis remanei CRE18119 I
DAPPUDRAFT_59354 Daphnia pulex DAPPUDRAFT_59354 I
DAPPUDRAFT_59366 Daphnia pulex DAPPUDRAFT_59366 I
HCOI01255700 Haemonchus contortus HCOI01255700 I
WBGene00247213 Onchocerca volvulus WBGene00247213 I
PTRK_0000394000 Parastrongyloides trichosuri PTRK_0000394000 N
RSKR_0000207000 Rhabditophanes kr3021 RSKR_0000207000 N
L596_g12623 Steinernema carpocapsae L596_g12623 I
L898_g31228 Steinernema monticolum L898_g31228 N
L892_g16474 Steinernema scapterisci L892_g16474 I
SPAL_0000556200 Strongyloides papillosus SPAL_0000556200 N
SSTP_0001033100 Strongyloides stercoralis SSTP_0001033100 N