CBN11476 (Caenorhabditis brenneri)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 CBN11476 T339385_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TBX20
M03565_2.00 		Homo sapiens
AGGTGTKARVGYGTGA
TCACRCBYTMACACCT		 SELEX
Jolma et al.(2013)
TBX20_1 		0.752 0.659
TBX20
M03566_2.00 		Homo sapiens
AGGTGTGAAWDTSACACBT
AVGTGTSAHWTTCACACCT		 SELEX
Jolma et al.(2013)
TBX20_2 		0.752 0.659
TBX20
M03567_2.00 		Homo sapiens
NNNDAGGTGTGAAND
HNTTCACACCTHNNN		 SELEX
Jolma et al.(2013)
TBX20_3 		0.752 0.659
TBX20
M03568_2.00 		Homo sapiens
DAGGTGTGAWR
YWTCACACCTH		 SELEX
Jolma et al.(2013)
TBX20_4 		0.752 0.659
TBX20
M03569_2.00 		Homo sapiens
AGGTGTKANGKTGTSA
TSACAMCNTMACACCT		 SELEX
Jolma et al.(2013)
TBX20_5 		0.752 0.659
TBX20
M05813_2.00 		Homo sapiens
DAGGTGTKARSGTGTGAA
TTCACACSYTMACACCTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1 		0.752 0.659
TBX20
M05814_2.00 		Homo sapiens
NAGGTGTGAAWTTCACACCTN
NAGGTGTGAAWTTCACACCTN		 SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2 		0.752 0.659
TBX20
M05817_2.00 		Homo sapiens
DRRGTGTBADVGYGTBAN
NTVACRCBHTVACACYYH		 SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1 		0.752 0.659
TBX20
M05818_2.00 		Homo sapiens
WTCACACYTAGGTGTKAM
KTMACACCTARGTGTGAW		 SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2 		0.752 0.659
TBX20
M11385_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX20_05 		0.752 0.659
TBX20
M05815_2.00 		Homo sapiens
DAGGTGTKAASGYGTKAA
TTMACRCSTTMACACCTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1 		0.752 0.659
TBX20
M05816_2.00 		Homo sapiens
DASGTGTGAWWWTCACACCTH
DAGGTGTGAWWWTCACACSTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2 		0.752 0.659
TBX20
M05819_2.00 		Homo sapiens
DRGGYGTBARVGYGTKAN
NTMACRCBYTVACRCCYH		 SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1 		0.752 0.659
TBX20
M05820_2.00 		Homo sapiens
TTMACRCCTAVGTGTGAA
TTCACACBTAGGYGTKAA		 SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2 		0.752 0.659
Tbx20
M00835_2.00 		Mus musculus
NRRGTGTBAN
NTVACACYYN		 PBM
Weirauch et al.(2013)
pTH3777 		0.752 0.654
Tbx20
M09430_2.00 		Mus musculus
NDSTGNTGACAGSN
NSCTGTCANCASHN		 Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C 		0.752 0.654
Tbx20
M09650_2.00 		Mus musculus
SCTGTCADCASN
NSTGHTGACAGS		 Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636 		0.752 0.654
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN11476 T-box 73 262

Links

Other T-box family TFs
Other Caenorhabditis brenneri TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mab-9 Caenorhabditis elegans WBGene00003106 I 0.920
CBG07058 Caenorhabditis briggsae CBG07058 I 0.915
CBG24273 Caenorhabditis briggsae CBG24273 I 0.915
CRE18119 Caenorhabditis remanei CRE18119 I 0.914
CJA32610 Caenorhabditis japonica CJA32610 I 0.898
HCOI01255700 Haemonchus contortus HCOI01255700 I 0.882
L596_g12623 Steinernema carpocapsae L596_g12623 I 0.858
L892_g16474 Steinernema scapterisci L892_g16474 I 0.858
PTRK_0000394000 Parastrongyloides trichosuri PTRK_0000394000 N 0.851
SPAL_0000556200 Strongyloides papillosus SPAL_0000556200 N 0.851
SSTP_0001033100 Strongyloides stercoralis SSTP_0001033100 N 0.851
ASU_05625 Ascaris suum ASU_05625 I 0.850
WBGene00247213 Onchocerca volvulus WBGene00247213 I 0.849
L889_g25747 Steinernema feltiae L889_g25747 N 0.843
L898_g31228 Steinernema monticolum L898_g31228 N 0.843
nAv.1.0.1.g03795 Acanthocheilonema viteae nAv.1.0.1.g03795 N 0.834
Bm6032 Brugia malayi Bm6032 N 0.826
RSKR_0000207000 Rhabditophanes kr3021 RSKR_0000207000 N 0.824
DAPPUDRAFT_59366 Daphnia pulex DAPPUDRAFT_59366 I 0.759
TBX20 Canis familiaris ENSCAFG00000028536 I 0.756
DAPPUDRAFT_59354 Daphnia pulex DAPPUDRAFT_59354 I 0.753
TBX20 Anolis carolinensis ENSACAG00000007473 I 0.752
TBX20 Bos taurus ENSBTAG00000017541 I 0.752
TBX20 Callithrix jacchus ENSCJAG00000012232 I 0.752
TBX20 Cavia porcellus ENSCPOG00000015229 I 0.752
ENSCSAG00000014936 Chlorocebus sabaeus ENSCSAG00000014936 I 0.752
TBX20 Dasypus novemcinctus ENSDNOG00000004142 I 0.752
TBX20 Equus caballus ENSECAG00000018182 I 0.752
TBX20 Erinaceus europaeus ENSEEUG00000010135 I 0.752
TBX20 Echinops telfairi ENSETEG00000012771 I 0.752
ENSFALG00000002727 Ficedula albicollis ENSFALG00000002727 I 0.752
TBX20 Felis catus ENSFCAG00000013004 I 0.752
TBX20 Homo sapiens ENSG00000164532 D 0.752
ENSGALG00000012151 Gallus gallus ENSGALG00000012151 I 0.752
TBX20 Gorilla gorilla ENSGGOG00000026618 I 0.752
TBX20 Loxodonta africana ENSLAFG00000012790 I 0.752
TBX20 Meleagris gallopavo ENSMGAG00000012040 I 0.752
TBX20 Myotis lucifugus ENSMLUG00000015517 I 0.752
TBX20 Macaca mulatta ENSMMUG00000012549 I 0.752
TBX20 Monodelphis domestica ENSMODG00000000085 I 0.752
ENSMPUG00000007865 Mustela putorius furo ENSMPUG00000007865 I 0.752
Tbx20 Mus musculus ENSMUSG00000031965 D 0.752
ENSNLEG00000001606 Nomascus leucogenys ENSNLEG00000001606 I 0.752
ENSOANG00000006968 Ornithorhynchus anatinus ENSOANG00000006968 I 0.752
ENSOARG00000005153 Ovis aries ENSOARG00000005153 I 0.752
TBX20 Oryctolagus cuniculus ENSOCUG00000007422 I 0.752
TBX20 Otolemur garnettii ENSOGAG00000010338 I 0.752
TBX20 Ochotona princeps ENSOPRG00000013626 I 0.752
ENSPANG00000007074 Papio anubis ENSPANG00000007074 I 0.752
ENSPPYG00000017641 Pongo abelii ENSPPYG00000017641 I 0.752
ENSPSIG00000016149 Pelodiscus sinensis ENSPSIG00000016149 I 0.752
TBX20 Pan troglodytes ENSPTRG00000019076 I 0.752
Tbx20 Rattus norvegicus ENSRNOG00000016181 I 0.752
ENSSHAG00000016356 Sarcophilus harrisii ENSSHAG00000016356 I 0.752
TBX20 Sus scrofa ENSSSCG00000016662 I 0.752
TBX20 Taeniopygia guttata ENSTGUG00000005375 I 0.752
TBX20 Tursiops truncatus ENSTTRG00000016622 I 0.752
Cmyd_10006683 Chelonia mydas Cmyd_10006683 I 0.752
ENSP00000386170-D1 Bos grunniens ENSP00000386170-D1 I 0.752
ENSP00000386170 Macaca fascicularis ENSP00000386170 I 0.752
Myotis_brandtii_Tbx20_10020109 Myotis brandtii Myotis_brandtii_Tbx20_10020109 I 0.752
Pvit_04171 Pogona vitticeps Pvit_04171 I 0.752
Sakowv30029504m.g Saccoglossus kowalevskii Sakowv30029504m.g I 0.748
ENSAMXG00000002328 Astyanax mexicanus ENSAMXG00000002328 I 0.747
tbx20 Danio rerio ENSDARG00000005150 I 0.747
tbx20 Gasterosteus aculeatus ENSGACG00000012706 I 0.747
ENSGMOG00000012734 Gadus morhua ENSGMOG00000012734 I 0.747
ENSLOCG00000002483 Lepisosteus oculatus ENSLOCG00000002483 I 0.747
ENSONIG00000006593 Oreochromis niloticus ENSONIG00000006593 I 0.747
ENSPFOG00000012859 Poecilia formosa ENSPFOG00000012859 I 0.747
tbx20 Tetraodon nigroviridis ENSTNIG00000005154 I 0.747
tbx20 Takifugu rubripes ENSTRUG00000005667 I 0.747
ENSXMAG00000004704 Xiphophorus maculatus ENSXMAG00000004704 I 0.747
tbx20 Xenopus tropicalis XB-GENE-487334 I 0.747
tbx20.L Xenopus laevis XB-GENE-865696 I 0.747
Ogr18070 Ophisaurus gracilis Ogr18070 I 0.746
MCOS_0000012101 Mesocestoides corti MCOS_0000012101 I 0.745
ENSLACG00000010741 Latimeria chalumnae ENSLACG00000010741 I 0.744
AGAP008563 Anopheles gambiae AGAP008563 I 0.743
Ocbimv22004458m.g Octopus bimaculoides Ocbimv22004458m.g I 0.743
ASTEI05186 Anopheles stephensi ASTEI05186 I 0.743
EmuJ_000377200 Echinococcus multilocularis EmuJ_000377200 I 0.742
CGI_10020437 Crassostrea gigas CGI_10020437 I 0.739
HelroG134299 Helobdella robusta HelroG134299 I 0.737
T265_12717 Opisthorchis viverrini T265_12717 I 0.737
HMEL012426 Heliconius melpomene HMEL012426 I 0.736
csin100383 Clonorchis sinensis csin100383 I 0.736