Carubv10001433m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10001433m.g T286219_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.886 0.968
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.776 0.785
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.776 0.785
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.752 0.785
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.752 0.785
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.736 0.720
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.736 0.720
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.718 0.763
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.718 0.763
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.704 0.796
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.704 0.796
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.675 0.742
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.666 0.710
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.666 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001433m Myb 14 61
Carubv10001433m Myb 67 112
Carubv10001816m Myb 45 92
Carubv10001816m Myb 98 143

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

639 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00757 Aegilops tauschii F775_00757 I
F775_02479 Aegilops tauschii F775_02479 N
F775_02480 Aegilops tauschii F775_02480 N
F775_03184 Aegilops tauschii F775_03184 I
F775_04232 Aegilops tauschii F775_04232 N
F775_07376 Aegilops tauschii F775_07376 I
F775_15928 Aegilops tauschii F775_15928 I
F775_21933 Aegilops tauschii F775_21933 I
F775_25840 Aegilops tauschii F775_25840 I
F775_27484 Aegilops tauschii F775_27484 I
F775_30853 Aegilops tauschii F775_30853 I
BRADI1G17660 Brachypodium distachyon BRADI1G17660 I
BRADI2G53510 Brachypodium distachyon BRADI2G53510 I
BRADI2G53520 Brachypodium distachyon BRADI2G53520 I
BRADI3G34850 Brachypodium distachyon BRADI3G34850 I
BRADI4G28280 Brachypodium distachyon BRADI4G28280 I
BRADI4G44342 Brachypodium distachyon BRADI4G44342 N
BRADI4G44350 Brachypodium distachyon BRADI4G44350 I
BRADI4G44360 Brachypodium distachyon BRADI4G44360 I
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N
Carubv10022162m.g Capsella rubella Carubv10022162m.g I
MLOC_45055 Hordeum vulgare MLOC_45055 I
MLOC_52504 Hordeum vulgare MLOC_52504 I
MLOC_71897 Hordeum vulgare MLOC_71897 I
MLOC_74606 Hordeum vulgare MLOC_74606 I
MLOC_78461 Hordeum vulgare MLOC_78461 I
LPERR01G30490 Leersia perrieri LPERR01G30490 I
LPERR01G30500 Leersia perrieri LPERR01G30500 I
LPERR05G06630 Leersia perrieri LPERR05G06630 I
LPERR05G16170 Leersia perrieri LPERR05G16170 I
LPERR07G23280 Leersia perrieri LPERR07G23280 I
LPERR09G04330 Leersia perrieri LPERR09G04330 I
LPERR11G00960 Leersia perrieri LPERR11G00960 I
LPERR11G00970 Leersia perrieri LPERR11G00970 N
LPERR12G01080 Leersia perrieri LPERR12G01080 N
MDP0000146360 Malus domestica MDP0000146360 I
MDP0000299114 Malus domestica MDP0000299114 I
MDP0000315045 Malus domestica MDP0000315045 I
MDP0000754989 Malus domestica MDP0000754989 I
mgf006355m Mimulus guttatus mgf006355m I
mgf015087m Mimulus guttatus mgf015087m I
GSMUA_Achr5G07490_001 Musa acuminata GSMUA_Achr5G07490_001 I
GSMUA_Achr5G08580_001 Musa acuminata GSMUA_Achr5G08580_001 I
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I
OBART01G35380 Oryza barthii OBART01G35380 I
OBART05G08130 Oryza barthii OBART05G08130 I
OBART05G20340 Oryza barthii OBART05G20340 I
OBART07G26430 Oryza barthii OBART07G26430 I
OBART09G06020 Oryza barthii OBART09G06020 I
OBART11G01100 Oryza barthii OBART11G01100 N
OBART11G01110 Oryza barthii OBART11G01110 I
OBART12G00850 Oryza barthii OBART12G00850 N
OB01G44170 Oryza brachyantha OB01G44170 I
OB05G17240 Oryza brachyantha OB05G17240 I
OB07G31890 Oryza brachyantha OB07G31890 I
OB11G10760 Oryza brachyantha OB11G10760 N
OB12G11030 Oryza brachyantha OB12G11030 N
ORGLA01G0292200 Oryza glaberrima ORGLA01G0292200 I
ORGLA05G0070000 Oryza glaberrima ORGLA05G0070000 I
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I
ORGLA07G0207800 Oryza glaberrima ORGLA07G0207800 I
ORGLA08G0116200 Oryza glaberrima ORGLA08G0116200 I
ORGLA11G0201900 Oryza glaberrima ORGLA11G0201900 N
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I
ORGLA12G0007500 Oryza glaberrima ORGLA12G0007500 N
ORGLA12G0007600 Oryza glaberrima ORGLA12G0007600 N
OGLUM01G39390 Oryza glumaepatula OGLUM01G39390 I
OGLUM05G08540 Oryza glumaepatula OGLUM05G08540 I
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I
OGLUM07G10380 Oryza glumaepatula OGLUM07G10380 I
OGLUM07G26470 Oryza glumaepatula OGLUM07G26470 I
OGLUM09G06630 Oryza glumaepatula OGLUM09G06630 I
OGLUM11G00850 Oryza glumaepatula OGLUM11G00850 I
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I
OGLUM12G01400 Oryza glumaepatula OGLUM12G01400 N
BGIOSGA004705 Oryza indica BGIOSGA004705 I
BGIOSGA017556 Oryza indica BGIOSGA017556 I
BGIOSGA017860 Oryza indica BGIOSGA017860 I
BGIOSGA023706 Oryza indica BGIOSGA023706 I
BGIOSGA030346 Oryza indica BGIOSGA030346 I
BGIOSGA030535 Oryza indica BGIOSGA030535 I
BGIOSGA034612 Oryza indica BGIOSGA034612 I
BGIOSGA034613 Oryza indica BGIOSGA034613 N
BGIOSGA036756 Oryza indica BGIOSGA036756 N
BGIOSGA036757 Oryza indica BGIOSGA036757 N
BGIOSGA040489 Oryza indica BGIOSGA040489 I
OLONG_000636 Oryza longistaminata OLONG_000636 I
OLONG_008209 Oryza longistaminata OLONG_008209 I
OLONG_019907 Oryza longistaminata OLONG_019907 I
OMERI01G32510 Oryza meridionalis OMERI01G32510 I
OMERI05G18170 Oryza meridionalis OMERI05G18170 I
OMERI05G18250 Oryza meridionalis OMERI05G18250 I
OMERI05G18260 Oryza meridionalis OMERI05G18260 I
OMERI07G23060 Oryza meridionalis OMERI07G23060 I
OMERI08G11390 Oryza meridionalis OMERI08G11390 I
OMERI09G04750 Oryza meridionalis OMERI09G04750 I
OMERI11G01520 Oryza meridionalis OMERI11G01520 N
OMERI11G01570 Oryza meridionalis OMERI11G01570 N
ONIVA01G40390 Oryza nivara ONIVA01G40390 I
ONIVA05G08650 Oryza nivara ONIVA05G08650 I
ONIVA05G21440 Oryza nivara ONIVA05G21440 I
ONIVA05G21460 Oryza nivara ONIVA05G21460 I
ONIVA07G26140 Oryza nivara ONIVA07G26140 I
ONIVA08G13920 Oryza nivara ONIVA08G13920 I
ONIVA09G05410 Oryza nivara ONIVA09G05410 I
ONIVA11G01050 Oryza nivara ONIVA11G01050 N
ONIVA11G01230 Oryza nivara ONIVA11G01230 N
ONIVA11G01240 Oryza nivara ONIVA11G01240 I
OPUNC01G34300 Oryza punctata OPUNC01G34300 I
OPUNC05G07410 Oryza punctata OPUNC05G07410 I
OPUNC05G17980 Oryza punctata OPUNC05G17980 I
OPUNC07G24890 Oryza punctata OPUNC07G24890 I
OPUNC11G00970 Oryza punctata OPUNC11G00970 N
OPUNC11G00980 Oryza punctata OPUNC11G00980 N
OPUNC12G00970 Oryza punctata OPUNC12G00970 N
OPUNC12G00990 Oryza punctata OPUNC12G00990 N
ORUFI01G38690 Oryza rufipogon ORUFI01G38690 I
ORUFI05G08750 Oryza rufipogon ORUFI05G08750 I
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I
ORUFI07G27440 Oryza rufipogon ORUFI07G27440 I
ORUFI08G15010 Oryza rufipogon ORUFI08G15010 I
ORUFI09G06720 Oryza rufipogon ORUFI09G06720 I
OS01G0821600 Oryza sativa OS01G0821600 I
OS05G0478400 Oryza sativa OS05G0478400 I
OS05G0478800 Oryza sativa OS05G0478800 I
OS07G0680400 Oryza sativa OS07G0680400 I
OS08G0386200 Oryza sativa OS08G0386200 I
OS09G0334500 Oryza sativa OS09G0334500 I
OS11G0117400 Oryza sativa OS11G0117400 N
OS11G0117500 Oryza sativa OS11G0117500 N
OS12G0116600 Oryza sativa OS12G0116600 N
OS12G0116700 Oryza sativa OS12G0116700 N
Pavir.Ba00227 Panicum virgatum Pavir.Ba00227 I
Pavir.Ba02545 Panicum virgatum Pavir.Ba02545 I
Pavir.Bb02088 Panicum virgatum Pavir.Bb02088 I
Pavir.Ca00084 Panicum virgatum Pavir.Ca00084 N
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I
Pavir.Ea03258 Panicum virgatum Pavir.Ea03258 I
Pavir.Eb03563 Panicum virgatum Pavir.Eb03563 I
Pavir.Fa01520 Panicum virgatum Pavir.Fa01520 I
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I
Pavir.J09582 Panicum virgatum Pavir.J09582 N
Pavir.J34713 Panicum virgatum Pavir.J34713 N
Pavir.J37854 Panicum virgatum Pavir.J37854 I
Pavir.J39511 Panicum virgatum Pavir.J39511 I
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I
Pm024064 Prunus mume Pm024064 I
PRUPE_ppa008573mg Prunus persica PRUPE_ppa008573mg I
Si002401m.g Setaria italica Si002401m.g I
Si010832m.g Setaria italica Si010832m.g N
Si015433m.g Setaria italica Si015433m.g I
Si019098m.g Setaria italica Si019098m.g N
Si025181m.g Setaria italica Si025181m.g I
Si027360m.g Setaria italica Si027360m.g N
Si027876m.g Setaria italica Si027876m.g N
Si028202m.g Setaria italica Si028202m.g I
Si030395m.g Setaria italica Si030395m.g I
Solyc08g008280.2 Solanum lycopersicum Solyc08g008280.2 I
Solyc10g009550.2 Solanum lycopersicum Solyc10g009550.2 I
PGSC0003DMG400005835 Solanum tuberosum PGSC0003DMG400005835 I
PGSC0003DMG400019884 Solanum tuberosum PGSC0003DMG400019884 I
Sb02g022290 Sorghum bicolor Sb02g022290 I
Sb02g043030 Sorghum bicolor Sb02g043030 I
Sb03g038210 Sorghum bicolor Sb03g038210 I
Sb05g001200 Sorghum bicolor Sb05g001200 N
Sb05g001220 Sorghum bicolor Sb05g001220 N
Sb07g019400 Sorghum bicolor Sb07g019400 I
Sb08g002560 Sorghum bicolor Sb08g002560 N
Sb08g002570 Sorghum bicolor Sb08g002570 N
Traes_2AS_6269D889E Triticum aestivum Traes_2AS_6269D889E I
Traes_2BS_B65714572 Triticum aestivum Traes_2BS_B65714572 I
TRAES3BF001300030CFD_g Triticum aestivum TRAES3BF001300030CFD_g I
TRAES3BF005100010CFD_g Triticum aestivum TRAES3BF005100010CFD_g I
Traes_4AS_0DA136E0E Triticum aestivum Traes_4AS_0DA136E0E I
Traes_5AL_69A969FF4 Triticum aestivum Traes_5AL_69A969FF4 N
Traes_5BL_0A3D332A8 Triticum aestivum Traes_5BL_0A3D332A8 I
Traes_5BL_F853EA802 Triticum aestivum Traes_5BL_F853EA802 I
Traes_5DL_5C93510D5 Triticum aestivum Traes_5DL_5C93510D5 I
Traes_5DL_C93641E43 Triticum aestivum Traes_5DL_C93641E43 I
TRIUR3_01445 Triticum urartu TRIUR3_01445 N
TRIUR3_01447 Triticum urartu TRIUR3_01447 N
TRIUR3_05298 Triticum urartu TRIUR3_05298 I
TRIUR3_06813 Triticum urartu TRIUR3_06813 I
TRIUR3_14306 Triticum urartu TRIUR3_14306 I
TRIUR3_17401 Triticum urartu TRIUR3_17401 I
TRIUR3_26571 Triticum urartu TRIUR3_26571 N
TRIUR3_30416 Triticum urartu TRIUR3_30416 I
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I
AC205562.3_FG002 Zea mays AC205562.3_FG002 I
GRMZM2G025895 Zea mays GRMZM2G025895 I
GRMZM2G059562 Zea mays GRMZM2G059562 I
GRMZM2G061408 Zea mays GRMZM2G061408 I
GRMZM2G169564 Zea mays GRMZM2G169564 N
GRMZM2G324999 Zea mays GRMZM2G324999 I
GRMZM2G400559 Zea mays GRMZM2G400559 N
GRMZM2G441031 Zea mays GRMZM2G441031 I