Gorai.008G274500 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.008G274500 T287688_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.909 1.000
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.901 0.957
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.901 0.957
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.901 0.957
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.901 0.957
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.899 0.978
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.899 0.978
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.899 0.978
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.803 0.891
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.803 0.891
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.803 0.891
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.696
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G274500.1 Myb 57 102
Gorai.008G274500.2 Myb 57 102
Gorai.008G274500.3 Myb 57 102
Gorai.008G274500.4 Myb 57 102
Gorai.008G274500.5 Myb 57 102

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32974 Aegilops tauschii F775_32974 N 0.000
BRADI2G52227 Brachypodium distachyon BRADI2G52227 N 0.000
BRADI4G03867 Brachypodium distachyon BRADI4G03867 N 0.000
MLOC_21297 Hordeum vulgare MLOC_21297 N 0.000
LPERR12G13750 Leersia perrieri LPERR12G13750 N 0.000
OBART11G23670 Oryza barthii OBART11G23670 N 0.000
OBART12G16530 Oryza barthii OBART12G16530 N 0.000
OB12G23410 Oryza brachyantha OB12G23410 N 0.000
ORGLA12G0207400 Oryza glaberrima ORGLA12G0207400 N 0.000
ORGLA11G0190300 Oryza glaberrima ORGLA11G0190300 N 0.000
OGLUM12G18120 Oryza glumaepatula OGLUM12G18120 N 0.000
BGIOSGA037646 Oryza indica BGIOSGA037646 N 0.000
OMERI12G11530 Oryza meridionalis OMERI12G11530 N 0.000
ONIVA12G14900 Oryza nivara ONIVA12G14900 N 0.000
ONIVA11G23190 Oryza nivara ONIVA11G23190 N 0.000
OPUNC12G15050 Oryza punctata OPUNC12G15050 N 0.000
ORUFI11G25550 Oryza rufipogon ORUFI11G25550 N 0.000
ORUFI12G18360 Oryza rufipogon ORUFI12G18360 N 0.000
OS12G0573200 Oryza sativa OS12G0573200 N 0.000
Pavir.Ha00317 Panicum virgatum Pavir.Ha00317 N 0.000
Pavir.J08330 Panicum virgatum Pavir.J08330 N 0.000
Pavir.J28748 Panicum virgatum Pavir.J28748 N 0.000
Pavir.J38998 Panicum virgatum Pavir.J38998 N 0.000
Sb08g018940 Sorghum bicolor Sb08g018940 N 0.000
Traes_5BS_ED54C58C5 Triticum aestivum Traes_5BS_ED54C58C5 N 0.000
Traes_5DS_C06FE6037 Triticum aestivum Traes_5DS_C06FE6037 N 0.000
TRIUR3_22881 Triticum urartu TRIUR3_22881 N 0.000
GRMZM2G179325 Zea mays GRMZM2G179325 N 0.000
GRMZM2G159475 Zea mays GRMZM2G159475 N 0.000