CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10012163m.g
(
Capsella rubella
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Carubv10012163m.g
T297501_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ANAC020
M07178_2.00
Arabidopsis thaliana
TTNCKTGHNNNDCAMGYHAHY
RDTDRCKTGHNNNDCAMGNAA
Dap-seq
OMalley et al.(2016)
ANAC020_col_v31
0.973
0.974
PK19314.1
M01291_2.00
Cannabis sativa
NNNNAMDNHW
WDNHKTNNNN
PBM
Lambert et al.(2019)
pTH11252
0.943
0.825
PK26618.1
M01292_2.00
Cannabis sativa
NNYAMGHHA
TDDCKTRNN
PBM
Lambert et al.(2019)
pTH11328
0.940
0.789
anac057
M07208_2.00
Arabidopsis thaliana
TNCKTGHNNNDCAMGYH
DRCKTGHNNNDCAMGNA
Dap-seq
OMalley et al.(2016)
ANAC057_col_a
0.928
0.711
anac057
M07209_2.00
Arabidopsis thaliana
WNCKTGHNNHDCAMGYHAYCD
HGRTDRCKTGHDNNDCAMGNW
Dap-seq
OMalley et al.(2016)
ANAC057_colamp_a
0.928
0.711
anac028
M01289_2.00
Arabidopsis thaliana
NTTGCGTRH
DYACGCAAN
PBM
Lambert et al.(2019)
pTH9962
0.923
0.789
anac028
M07179_2.00
Arabidopsis thaliana
CTTSHNNHDCAMGYWA
TWRCKTGHDNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC028_col_a
0.923
0.789
NAC045
M07194_2.00
Arabidopsis thaliana
TTNCTTSHNNNDCAMG
CKTGHNNNDSAAGNAA
Dap-seq
OMalley et al.(2016)
ANAC045_col_a
0.904
0.702
NAC045
M07195_2.00
Arabidopsis thaliana
TTNCTTSHNNNDCAMG
CKTGHNNNDSAAGNAA
Dap-seq
OMalley et al.(2016)
ANAC045_colamp_a
0.904
0.702
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10012163m
NAC/NAM
7
133
PPGFRFHPTDEELVAYYLDRKVNGRAIDLEIIPEVDLYKCEPWDLPEKSFLPGNDMEWYFYSTRDKKYPNGSRTNRATGAGYWKATGKDRTVESKKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Capsella rubella
TFs
215 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CaO19.13966
Candida albicans
CaO19.13966
I
0.000
CaO19.6645
Candida albicans
CaO19.6645
I
0.000
orf19.6645
Candida albicans
orf19.6645
D
0.000
CD36_31040
Candida dubliniensis
CD36_31040
I
0.000
CLUG_02468
Candida lusitaniae
CLUG_02468
N
0.000
G210_0850
Candida maltosa
G210_0850
I
0.000
CORT_0D04800
Candida orthopsilosis
CORT_0D04800
I
0.000
CPAG_04110
Candida parapsilosis
CPAG_04110
I
0.000
CANTEDRAFT_115813
Candida tenuis
CANTEDRAFT_115813
N
0.000
CTRG_00596
Candida tropicalis
CTRG_00596
I
0.000
CLUG_02468
Clavispora lusitaniae
CLUG_02468
N
0.000
DEHA2G23694g
Debaryomyces hansenii
DEHA2G23694g
N
0.000
LELG_03232
Lodderomyces elongisporus
LELG_03232
N
0.000
PGUG_04087
Meyerozyma guilliermondii
PGUG_04087
I
0.000
GNLVRS01_PISO0J18313g
Millerozyma farinosa
GNLVRS01_PISO0J18313g
N
0.000
GNLVRS01_PISO0I16552g
Millerozyma farinosa
GNLVRS01_PISO0I16552g
N
0.000
estExt_fgenesh1_pg.C_chr_2.10534
Pichia stipitis
estExt_fgenesh1_pg.C_chr_2.10534
I
0.000
PICST_66957
Scheffersomyces stipitis
PICST_66957
I
0.000
SPAPADRAFT_49202
Spathaspora passalidarum
SPAPADRAFT_49202
I
0.000