L898_g18539 (Steinernema monticolum)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 L898_g18539 T309443_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-86
M02415_2.00 		Caenorhabditis elegans
KTGTAGTC
GACTACAM		 PBM
Weirauch et al.(2014)
pTH8598 		0.759 0.543
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L898_g18539.t1 Nuclear receptor 10 80

Links

Other Nuclear receptor family TFs
Other Steinernema monticolum TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BXY_0973100 Bursaphelenchus xylophilus BXY_0973100 I 0.809
CBN03769 Caenorhabditis brenneri CBN03769 I 0.752
CBN04619 Caenorhabditis brenneri CBN04619 I 0.806
CBG16375 Caenorhabditis briggsae CBG16375 I 0.765
CBG12152 Caenorhabditis briggsae CBG12152 I 0.756
nhr-28 Caenorhabditis elegans WBGene00003624 I 0.760
nhr-86 Caenorhabditis elegans WBGene00003676 D 0.759
nhr-109 Caenorhabditis elegans WBGene00003699 I 0.804
CJA10576 Caenorhabditis japonica CJA10576 I 0.767
CRE18529 Caenorhabditis remanei CRE18529 I 0.760
GPLIN_000628500 Globodera pallida GPLIN_000628500 N 0.771
GPLIN_000805100 Globodera pallida GPLIN_000805100 N 0.771
scaffold260-EXSNAP2012.15 Pristionchus exspectatus scaffold260-EXSNAP2012.15 I 0.761
scaffold183-EXSNAP2012.18 Pristionchus exspectatus scaffold183-EXSNAP2012.18 I 0.765
PPA10478 Pristionchus pacificus PPA10478 I 0.761
PPA08785 Pristionchus pacificus PPA08785 I 0.765
L596_g24910 Steinernema carpocapsae L596_g24910 N 0.794
L596_g27786 Steinernema carpocapsae L596_g27786 I 0.833
L596_g9106 Steinernema carpocapsae L596_g9106 I 0.938
L889_g16048 Steinernema feltiae L889_g16048 N 0.819
L889_g17146 Steinernema feltiae L889_g17146 I 0.967
L893_g2090 Steinernema glaseri L893_g2090 I 0.833
L893_g3450 Steinernema glaseri L893_g3450 N 0.811
L898_g28806 Steinernema monticolum L898_g28806 I 0.834
L898_g9580 Steinernema monticolum L898_g9580 I 0.832
L892_g10708 Steinernema scapterisci L892_g10708 I 0.930
L892_g8144 Steinernema scapterisci L892_g8144 I 0.840
L892_g8146 Steinernema scapterisci L892_g8146 N 0.791