ENSSARG00000008230 (Sorex araneus)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSSARG00000008230 T313615_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		1.000 1.000
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.956 0.956
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.956 0.956
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.911 0.911
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.822 0.822
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.822 0.822
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000007434 Pipsqueak 350 395

Links

Other Pipsqueak family TFs
Other Sorex araneus TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N 0.000
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.000
SIG4 Arabidopsis lyrata scaffold_601382.1 N 0.000
SIGD Arabidopsis thaliana AT5G13730 N 0.000
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.000
Bo2g011520 Brassica oleracea Bo2g011520 N 0.000
Bo9g166510 Brassica oleracea Bo9g166510 N 0.000
Bra008807 Brassica rapa Bra008807 N 0.000
Bra023430 Brassica rapa Bra023430 N 0.000
PK06863.1 Cannabis sativa PK06863.1 N 0.000
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.000
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.000
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.000
Ca_22857 Cicer arietinum Ca_22857 N 0.000
Cla017559 Citrullus lanatus Cla017559 N 0.000
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.000
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.000
Cucsa.248920 Cucumis sativus Cucsa.248920 N 0.000
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.000
LjSGA_045184.1 Lotus japonicus LjSGA_045184.1 N 0.000
MDP0000235160 Malus domestica MDP0000235160 N 0.000
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.000
MTR_3g033420 Medicago truncatula MTR_3g033420 N 0.000
mgf003626m Mimulus guttatus mgf003626m N 0.000
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.000
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.000
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.000
Pm016510 Prunus mume Pm016510 N 0.000
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.000
29864.m001444 Ricinus communis 29864.m001444 N 0.000
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.000
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.000
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N 0.000
PGSC0003DMG402006783 Solanum tuberosum PGSC0003DMG402006783 N 0.000
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.000