genemark-nMf.1.1.scaf22092-processed-gene-0.1 (Meloidogyne floridensis)
POU

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00157 (Pou) IPR000327 genemark-nMf.1.1.scaf22092-processed-gene-0.1 T316336_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pou2f1
M00803_2.00 		Mus musculus
NHATWWNHNN
NNDNWWATDN		 PBM
Weirauch et al.(2013)
pTH4325 		0.774 0.774
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
genemark-nMf.1.1.scaf22092-processed-gene-0.1-mRNA-1 POU 1 53

Links

Other POU family TFs
Other Meloidogyne floridensis TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SHN2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002026 I
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I
SHN2 Arabidopsis thaliana AT5G11190 D
SHN3 Arabidopsis thaliana AT5G25390 I
Bostr.29827s0278 Boechera stricta Bostr.29827s0278 I
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I
Bo7g096000 Brassica oleracea Bo7g096000 N
Bo9g011380 Brassica oleracea Bo9g011380 I
Bo9g171490 Brassica oleracea Bo9g171490 I
Bra008985 Brassica rapa Bra008985 I
Bra036543 Brassica rapa Bra036543 I
Cagra.1110s0005 Capsella grandiflora Cagra.1110s0005 I
Carubv10003042m.g Capsella rubella Carubv10003042m.g I
Carubv10002040m.g Capsella rubella Carubv10002040m.g I
Carubv10003050m.g Capsella rubella Carubv10003050m.g I
evm.TU.supercontig_259.2 Carica papaya evm.TU.supercontig_259.2 I
Ca_01764 Cicer arietinum Ca_01764 I
Ca_09050 Cicer arietinum Ca_09050 I
Cla021283 Citrullus lanatus Cla021283 I
Ciclev10009526m.g Citrus clementina Ciclev10009526m.g I
orange1.1g028913m.g Citrus sinensis orange1.1g028913m.g I
Cucsa.310360 Cucumis sativus Cucsa.310360 I
Thhalv10015363m.g Eutrema salsugineum Thhalv10015363m.g I
Thhalv10005514m.g Eutrema salsugineum Thhalv10005514m.g I
gene11636-v1.0-hybrid Fragaria vesca gene11636-v1.0-hybrid I
GLYMA17G31900 Glycine max GLYMA17G31900 I
GLYMA06G07240 Glycine max GLYMA06G07240 I
GLYMA04G07140 Glycine max GLYMA04G07140 I
Gorai.001G033200 Gossypium raimondii Gorai.001G033200 I
Gorai.010G114800 Gossypium raimondii Gorai.010G114800 I
Gorai.011G082900 Gossypium raimondii Gorai.011G082900 I
Lus10019414.g Linum usitatissimum Lus10019414.g I
Lus10002015.g Linum usitatissimum Lus10002015.g I
Lus10002912.g Linum usitatissimum Lus10002912.g I
LjSGA_019003.1 Lotus japonicus LjSGA_019003.1 I
MDP0000287350 Malus domestica MDP0000287350 I
MDP0000178263 Malus domestica MDP0000178263 I
cassava40012.m1 Manihot esculenta cassava40012.m1 I
cassava30505.valid.m1 Manihot esculenta cassava30505.valid.m1 I
cassava10120.m1 Manihot esculenta cassava10120.m1 I
MTR_1g012470 Medicago truncatula MTR_1g012470 I
MTR_3g107380 Medicago truncatula MTR_3g107380 I
mgf017744m Mimulus guttatus mgf017744m I
POPTR_0018s01680 Populus trichocarpa POPTR_0018s01680 I
POPTR_0006s26990 Populus trichocarpa POPTR_0006s26990 I
Pm004616 Prunus mume Pm004616 I
PRUPE_ppa023908mg Prunus persica PRUPE_ppa023908mg I
29848.m004632 Ricinus communis 29848.m004632 I
SapurV1A.0043s0690 Salix purpurea SapurV1A.0043s0690 I
SapurV1A.0192s0020 Salix purpurea SapurV1A.0192s0020 I
PGSC0003DMG400030228 Solanum tuberosum PGSC0003DMG400030228 I
TCM_037007 Theobroma cacao TCM_037007 I
VIT_04s0008g05440 Vitis vinifera VIT_04s0008g05440 I