CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ACEP16409 *(Atta cephalotes)* Runt
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00853 (Runt)	IPR013524	ACEP16409	T319292_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
lz M03964_2.00	Drosophila melanogaster	HRACCGCAAHM	KDTTGCGGTYD	SELEX Nitta et al.(2015) lz_1	0.768	0.768
lz M03965_2.00	Drosophila melanogaster	HVACCRCARWAACCRCAV	BTGYGGTTWYTGYGGTBD	SELEX Nitta et al.(2015) lz_2	0.768	0.768
lz M03966_2.00	Drosophila melanogaster	WRACCRCAWTAACCRCAA	TTGYGGTTAWTGYGGTYW	SELEX Nitta et al.(2015) lz_3	0.768	0.768
lz M03967_2.00	Drosophila melanogaster	HRACCGCAAAACCRCAR	YTGYGGTTTTGCGGTYD	SELEX Nitta et al.(2015) lz_4	0.768	0.768
Runx1 M08163_2.00	Mus musculus	HRRCCACARVN	NBYTGTGGYYD	ChIP-seq Mathelier et al.(2014) MA0002.2	0.747	0.747
RUNX1 M09371_2.00	Homo sapiens	NWAACCACARV	BYTGTGGTTWN	Misc Kulakovskiy et al.(2013) RUNX1_HUMAN.H11MO.0.A	0.747	0.747
Runx1 M09372_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX1_MOUSE.H11MO.0.A	0.747	0.747
RUNX1 M09632_2.00	Homo sapiens	HAACCACADV	BHTGTGGTTD	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE29180	0.747	0.747
RUNX1 M09631_2.00	Homo sapiens	VCCACWTCCTBY	RVAGGAWGTGGB	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE17954	0.747	0.747
Runx1 M09633_2.00	Mus musculus	NWAACCACAR	YTGTGGTTWN	Misc Heinz et al.(2010) HPC7-Runx1_GSE22178	0.747	0.747
RUNX1 M11258_2.00	Homo sapiens	ACCRCA	TGYGGT	Transfac Matys et al.(2006) V$AML1_01	0.747	0.747
RUNX1 M11259_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_01	0.747	0.747
RUNX1 M11260_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_02	0.747	0.747
RUNX1 M11261_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4	0.747	0.747
RUNX1 M11262_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q5	0.747	0.747
RUNX1 M11263_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q6	0.747	0.747
Runx2 M01307_2.00	Mus musculus	NHDACCRCAN	NTGYGGTHDN	PBM Lambert et al.(2019) pTH9764	0.727	0.727
RUNX2 M03468_2.00	Homo sapiens	HRACCGCAAACCRCRD	HYGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX2_1	0.727	0.727
RUNX2 M03469_2.00	Homo sapiens	HRACCRCADWWACCRCAD	HTGYGGTWWHTGYGGTYD	SELEX Jolma et al.(2013) RUNX2_2	0.727	0.727
RUNX2 M03470_2.00	Homo sapiens	WAACCRCAR	YTGYGGTTW	SELEX Jolma et al.(2013) RUNX2_3	0.727	0.727
RUNX2 M05733_2.00	Homo sapiens	NHRACCRCADWAACCRCAVN	NBTGYGGTTWHTGYGGTYDN	SELEX Yin et al.(2017) RUNX2_eDBD_HT-SELEX	0.727	0.727
RUNX2 M09370_2.00	Homo sapiens	MMHAACCACAVVMH	DKBBTGTGGTTDKK	Misc Kulakovskiy et al.(2013) RUNX2_HUMAN.H11MO.0.A	0.727	0.727
Runx2 M09373_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX2_MOUSE.H11MO.0.A	0.727	0.727
RUNX2 M09630_2.00	Homo sapiens	NHVACCACANNN	NNNTGTGGTBDN	Misc Heinz et al.(2010) PCa-RUNX2_GSE33889	0.727	0.727
RUNX2 M11255_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q3	0.727	0.727
RUNX2 M11256_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q6	0.727	0.727
RUNX2 M11257_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OSF2_Q6	0.727	0.727
RUNX2 M05734_2.00	Homo sapiens	NWAACCACRAAAACCACRRN	NYYGTGGTTTTYGTGGTTWN	SELEX Yin et al.(2017) RUNX2_eDBD_Methyl-HT-SELEX	0.727	0.727
RUNX3 M03464_2.00	Homo sapiens	HRACCGCAAACCRCAN	NTGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX3_1	0.707	0.707
RUNX3 M03465_2.00	Homo sapiens	WAACCRCARN	NYTGYGGTTW	SELEX Jolma et al.(2013) RUNX3_2	0.707	0.707
RUNX3 M03466_2.00	Homo sapiens	HDACCRCADWAACCRCRN	NYGYGGTTWHTGYGGTHD	SELEX Jolma et al.(2013) RUNX3_3	0.707	0.707
RUNX3 M03467_2.00	Homo sapiens	HRACCRCAAH	DTTGYGGTYD	SELEX Jolma et al.(2013) RUNX3_4	0.707	0.707
RUNX3 M02751_2.00	Homo sapiens	WACCRCAM	KTGYGGTW	SELEX Jolma et al.(2010) RUNX3_monomer	0.707	0.707
RUNX3 M05731_2.00	Homo sapiens	YWAACCGCAAAAACCGCARV	BYTGCGGTTTTTGCGGTTWR	SELEX Yin et al.(2017) RUNX3_FL_HT-SELEX	0.707	0.707
RUNX3 M09369_2.00	Homo sapiens	HAACCACARN	NYTGTGGTTD	Misc Kulakovskiy et al.(2013) RUNX3_HUMAN.H11MO.0.A	0.707	0.707
Runx3 M09374_2.00	Mus musculus	NHRACCACARVN	NBYTGTGGTYDN	Misc Kulakovskiy et al.(2013) RUNX3_MOUSE.H11MO.0.A	0.707	0.707
RUNX3 M11252_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3_01	0.707	0.707
RUNX3 M11253_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3	0.707	0.707
RUNX3 M11254_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q4	0.707	0.707
RUNX3 M05732_2.00	Homo sapiens	HWAACCACRAAAACCACRARN	NYTYGTGGTTTTYGTGGTTWD	SELEX Yin et al.(2017) RUNX3_FL_Methyl-HT-SELEX	0.707	0.707
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ACEP16409-PA	Runt	148	246	VGEAQAEHPGELVRTGSPYFLCSQLPTHWRSNKTLPVAFKVVALGEVGDGTLVTVRAGNDENCCAELRNSTALMKNQVAKFNDLRFVGRSGRVQWRVAF

Links
Other Runt family TFs
Other *Atta cephalotes* TFs

91 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
nAv.1.0.1.g02876	Acanthocheilonema viteae	nAv.1.0.1.g02876	N	0.000
ANCDUO_19967	Ancylostoma duodenale	ANCDUO_19967	N	0.000
ASIM_0001677501	Anisakis simplex	ASIM_0001677501	N	0.000
ASU_12719	Ascaris suum	ASU_12719	N	0.000
Bm3899	Brugia malayi	Bm3899	N	0.000
BTMF_0001429501	Brugia timori	BTMF_0001429501	N	0.000
BXY_0574800	Bursaphelenchus xylophilus	BXY_0574800	N	0.000
CBN00758	Caenorhabditis brenneri	CBN00758	N	0.000
CBN06012	Caenorhabditis brenneri	CBN06012	N	0.000
CBG02231	Caenorhabditis briggsae	CBG02231	N	0.000
tag-68	Caenorhabditis elegans	WBGene00006445	N	0.000
CJA12147	Caenorhabditis japonica	CJA12147	N	0.000
CRE29609	Caenorhabditis remanei	CRE29609	N	0.000
nDi.2.2.2.g08539	Dirofilaria immitis	nDi.2.2.2.g08539	N	0.000
GPUH_0002405001	Gongylonema pulchrum	GPUH_0002405001	N	0.000
HCOI01584000	Haemonchus contortus	HCOI01584000	N	0.000
nLs.2.1.2.g02844	Litomosoides sigmodontis	nLs.2.1.2.g02844	N	0.000
LOAG_18157	Loa loa	LOAG_18157	N	0.000
MhA1_Contig659.frz3.gene12	Meloidogyne hapla	MhA1_Contig659.frz3.gene12	N	0.000
Minc01466	Meloidogyne incognita	Minc01466	N	0.000
Minc00757	Meloidogyne incognita	Minc00757	N	0.000
nOo.2.0.1.g06284	Onchocerca ochengi	nOo.2.0.1.g06284	N	0.000
PEQ_0000361701	Parascaris equorum	PEQ_0000361701	N	0.000
PTRK_0001052400	Parastrongyloides trichosuri	PTRK_0001052400	N	0.000
L596_g21063	Steinernema carpocapsae	L596_g21063	N	0.000
L889_g15246	Steinernema feltiae	L889_g15246	N	0.000
L893_g5132	Steinernema glaseri	L893_g5132	N	0.000
L898_g4344	Steinernema monticolum	L898_g4344	N	0.000
SPAL_0000096300	Strongyloides papillosus	SPAL_0000096300	N	0.000
SSTP_0000137400	Strongyloides stercoralis	SSTP_0000137400	N	0.000
SVE_0382900	Strongyloides venezuelensis	SVE_0382900	N	0.000
TELCIR_17986	Teladorsagia circumcincta	TELCIR_17986	N	0.000
TCLT_0000822701	Thelazia callipaeda	TCLT_0000822701	N	0.000
TCNE_0001786701	Toxocara canis	TCNE_0001786701	N	0.000
WUBG_00492	Wuchereria bancrofti	WUBG_00492	N	0.000

ACEP16409 (Atta cephalotes) Runt

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

91 Related TFs

ACEP16409 **(Atta cephalotes)
Runt**