Runx1 (Dipodomys ordii)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSDORG00000004347 T319366_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		1.000 1.000
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		1.000 1.000
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		1.000 1.000
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		1.000 1.000
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		1.000 1.000
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		1.000 1.000
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		1.000 1.000
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		1.000 1.000
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		1.000 1.000
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		1.000 1.000
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		1.000 1.000
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		1.000 1.000
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.931 0.931
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.931 0.931
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.931 0.931
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.931 0.931
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.931 0.931
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.931 0.931
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.931 0.931
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.931 0.931
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.931 0.931
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.931 0.931
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.931 0.931
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.931 0.931
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.923 0.923
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.923 0.923
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.923 0.923
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.923 0.923
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.923 0.923
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.923 0.923
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.923 0.923
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.923 0.923
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.923 0.923
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.923 0.923
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.923 0.923
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.923 0.923
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.731 0.731
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.731 0.731
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.731 0.731
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000004065 Runt 77 206

Links

Other Runt family TFs
Other Dipodomys ordii TFs

328 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005109 Ailuropoda melanoleuca ENSAMEG00000005109 I
ENSAMEG00000017984 Ailuropoda melanoleuca ENSAMEG00000017984 I
Alligator_sinensis_CCG003696.1 Alligator sinensis Alligator_sinensis_CCG003696.1 I
Alligator_sinensis_CCG004564.1 Alligator sinensis Alligator_sinensis_CCG004564.1 I
Alligator_sinensis_CCG015719.1 Alligator sinensis Alligator_sinensis_CCG015719.1 I
ENSAPLG00000009319 Anas platyrhynchos ENSAPLG00000009319 I
IRF6 Anolis carolinensis ENSACAG00000005931 I
Afo_R001981 Aptenodytes forsteri Afo_R001981 I
ENSAMXG00000004616 Astyanax mexicanus ENSAMXG00000004616 I
ENSP00000349770-D1 Bos grunniens ENSP00000349770-D1 I
ENSP00000349770-D2 Bos grunniens ENSP00000349770-D2 I
IRF6 Bos taurus ENSBTAG00000002849 I
IRF5 Bos taurus ENSBTAG00000004989 I
IRF6 Callithrix jacchus ENSCJAG00000015032 I
IRF5 Callithrix jacchus ENSCJAG00000018061 I
IRF5 Canis familiaris ENSCAFG00000001611 I
IRF6 Canis familiaris ENSCAFG00000011971 I
IRF5 Cavia porcellus ENSCPOG00000000246 I
IRF6 Cavia porcellus ENSCPOG00000023829 I
Cmyd_10002838 Chelonia mydas Cmyd_10002838 I
Cmyd_10010684 Chelonia mydas Cmyd_10010684 I
ENSCSAG00000009970 Chlorocebus sabaeus ENSCSAG00000009970 I
ENSCSAG00000015263 Chlorocebus sabaeus ENSCSAG00000015263 I
IRF6 Choloepus hoffmanni ENSCHOG00000010399 I
irf5 Danio rerio ENSDARG00000045681 I
irf6 Danio rerio ENSDARG00000101986 I
IRF6 Dasypus novemcinctus ENSDNOG00000001694 I
IRF5 Dasypus novemcinctus ENSDNOG00000013370 I
Irf6 Dipodomys ordii ENSDORG00000008891 I
Irf5 Dipodomys ordii ENSDORG00000010627 I
IRF6 Echinops telfairi ENSETEG00000008368 I
IRF6 Equus caballus ENSECAG00000007482 I
IRF5 Equus caballus ENSECAG00000009902 I
IRF5 Felis catus ENSFCAG00000000956 I
IRF6 Felis catus ENSFCAG00000015138 I
ENSGMOG00000007264 Gadus morhua ENSGMOG00000007264 I
ENSGMOG00000007988 Gadus morhua ENSGMOG00000007988 I
IRF6 Gallus gallus ENSGALG00000001405 D
irf5 Gasterosteus aculeatus ENSGACG00000000695 I
irf6 Gasterosteus aculeatus ENSGACG00000000990 I
IRF6 Gorilla gorilla ENSGGOG00000006214 I
IRF5 Gorilla gorilla ENSGGOG00000012013 I
IRF6 Homo sapiens ENSG00000117595 D
IRF5 Homo sapiens ENSG00000128604 D
ENSSTOG00000004858 Ictidomys tridecemlineatus ENSSTOG00000004858 I
ENSSTOG00000028204 Ictidomys tridecemlineatus ENSSTOG00000028204 I
ENSLACG00000005750 Latimeria chalumnae ENSLACG00000005750 I
ENSLACG00000018600 Latimeria chalumnae ENSLACG00000018600 I
ENSLOCG00000011297 Lepisosteus oculatus ENSLOCG00000011297 I
ENSLOCG00000015563 Lepisosteus oculatus ENSLOCG00000015563 I
IRF6 Loxodonta africana ENSLAFG00000001374 I
IRF5 Loxodonta africana ENSLAFG00000021568 I
ENSP00000349770 Macaca fascicularis ENSP00000349770 I
ENSP00000355988 Macaca fascicularis ENSP00000355988 I
IRF5 Macaca mulatta ENSMMUG00000018478 I
IRF6 Macaca mulatta ENSMMUG00000022065 I
ENSMEUG00000002435 Macropus eugenii ENSMEUG00000002435 I
ENSMEUG00000014941 Macropus eugenii ENSMEUG00000014941 I
IRF6 Meleagris gallopavo ENSMGAG00000004431 D
IRF5 Microcebus murinus ENSMICG00000000138 I
IRF6 Microcebus murinus ENSMICG00000001233 I
IRF6 Monodelphis domestica ENSMODG00000002539 I
IRF5 Monodelphis domestica ENSMODG00000014710 I
ENSMPUG00000003106 Mustela putorius furo ENSMPUG00000003106 I
ENSMPUG00000006034 Mustela putorius furo ENSMPUG00000006034 I
Irf6 Mus musculus ENSMUSG00000026638 D
Irf5 Mus musculus ENSMUSG00000029771 D
Myotis_brandtii_IRF5_10012830 Myotis brandtii Myotis_brandtii_IRF5_10012830 I
Myotis_brandtii_IRF6_10012270 Myotis brandtii Myotis_brandtii_IRF6_10012270 I
IRF5 Myotis lucifugus ENSMLUG00000001406 I
IRF6 Myotis lucifugus ENSMLUG00000004509 I
ENSNLEG00000001962 Nomascus leucogenys ENSNLEG00000001962 I
ENSNLEG00000012454 Nomascus leucogenys ENSNLEG00000012454 I
IRF5 Ochotona princeps ENSOPRG00000006148 I
IRF6 Ochotona princeps ENSOPRG00000014295 I
Ogr12956 Ophisaurus gracilis Ogr12956 I
ENSONIG00000007600 Oreochromis niloticus ENSONIG00000007600 I
ENSONIG00000018961 Oreochromis niloticus ENSONIG00000018961 I
IRF5 Ornithorhynchus anatinus ENSOANG00000011449 I
IRF6 Ornithorhynchus anatinus ENSOANG00000013718 I
IRF6 Oryctolagus cuniculus ENSOCUG00000004035 I
IRF5 Oryctolagus cuniculus ENSOCUG00000010101 D
irf6 Oryzias latipes ENSORLG00000000511 I
IRF6 Otolemur garnettii ENSOGAG00000010708 I
ENSOARG00000003908 Ovis aries ENSOARG00000003908 I
ENSOARG00000012720 Ovis aries ENSOARG00000012720 I
ENSOARG00000020948 Ovis aries ENSOARG00000020948 I
IRF6 Pan troglodytes ENSPTRG00000001941 I
IRF5 Pan troglodytes ENSPTRG00000019675 I
ENSPANG00000011328 Papio anubis ENSPANG00000011328 I
ENSPANG00000018384 Papio anubis ENSPANG00000018384 I
ENSPSIG00000003597 Pelodiscus sinensis ENSPSIG00000003597 I
ENSPFOG00000005876 Poecilia formosa ENSPFOG00000005876 I
ENSPFOG00000013528 Poecilia formosa ENSPFOG00000013528 I
ENSPFOG00000014077 Poecilia formosa ENSPFOG00000014077 I
Pvit_14327 Pogona vitticeps Pvit_14327 I
Pvit_15428 Pogona vitticeps Pvit_15428 I
ENSPPYG00000000253 Pongo abelii ENSPPYG00000000253 I
ENSPPYG00000017989 Pongo abelii ENSPPYG00000017989 I
IRF6 Procavia capensis ENSPCAG00000006456 I
IRF6 Pteropus vampyrus ENSPVAG00000004865 I
Irf6 Rattus norvegicus ENSRNOG00000005082 I
Irf5 Rattus norvegicus ENSRNOG00000007437 I
ENSSHAG00000006683 Sarcophilus harrisii ENSSHAG00000006683 I
IRF6 Sus scrofa ENSSSCG00000015612 I
IRF5 Sus scrofa ENSSSCG00000016573 I
IRF6 Taeniopygia guttata ENSTGUG00000001485 I
irf5 Takifugu rubripes ENSTRUG00000000641 I
irf6 Takifugu rubripes ENSTRUG00000006951 I
ENSTSYG00000010982 Tarsius syrichta ENSTSYG00000010982 I
irf5 Tetraodon nigroviridis ENSTNIG00000003346 I
irf6 Tetraodon nigroviridis ENSTNIG00000014635 I
IRF6 Tursiops truncatus ENSTTRG00000001121 I
IRF6 Vicugna pacos ENSVPAG00000010247 I
irf6.2.L Xenopus laevis XB-GENE-5910427 I
irf5.L Xenopus laevis XB-GENE-998629 D
irf6.2 Xenopus tropicalis XB-GENE-5910331 D
irf6 Xenopus tropicalis XB-GENE-876410 I
irf5 Xenopus tropicalis XB-GENE-998624 I
ENSXMAG00000007143 Xiphophorus maculatus ENSXMAG00000007143 I
ENSXMAG00000013056 Xiphophorus maculatus ENSXMAG00000013056 I