POPTR_0009s16780 (Populus trichocarpa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 POPTR_0009s16780 T320746_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s16780.1 RWP-RK 82 130

Links

Other RWP-RK family TFs
Other Populus trichocarpa TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_11333 Aegilops tauschii F775_11333 N
BRADI5G01900 Brachypodium distachyon BRADI5G01900 N
evm.TU.supercontig_69.52 Carica papaya evm.TU.supercontig_69.52 N
Cla016068 Citrullus lanatus Cla016068 I
Cucsa.010660 Cucumis sativus Cucsa.010660 I
MLOC_44850 Hordeum vulgare MLOC_44850 N
cassava27372.m1 Manihot esculenta cassava27372.m1 N
GSMUA_Achr3G00640_001 Musa acuminata GSMUA_Achr3G00640_001 N
OBART04G06800 Oryza barthii OBART04G06800 N
ORGLA04G0051300 Oryza glaberrima ORGLA04G0051300 N
OGLUM04G06590 Oryza glumaepatula OGLUM04G06590 N
BGIOSGA015389 Oryza indica BGIOSGA015389 N
OMERI03G04040 Oryza meridionalis OMERI03G04040 N
ONIVA01G07150 Oryza nivara ONIVA01G07150 N
OPUNC04G05620 Oryza punctata OPUNC04G05620 N
ORUFI04G07840 Oryza rufipogon ORUFI04G07840 N
OS04G0300600 Oryza sativa OS04G0300600 N
Pavir.Gb02374 Panicum virgatum Pavir.Gb02374 N
Pavir.Ga02257 Panicum virgatum Pavir.Ga02257 N
Pavir.J18808 Panicum virgatum Pavir.J18808 N
fgenesh1_pg.scaffold_1000274 Physcomitrella patens fgenesh1_pg.scaffold_1000274 I
estExt_gwp_gw1.C_1820005 Physcomitrella patens estExt_gwp_gw1.C_1820005 I
estExt_fgenesh1_pg.C_1590022 Physcomitrella patens estExt_fgenesh1_pg.C_1590022 I
e_gw1.25.105.1 Physcomitrella patens e_gw1.25.105.1 I
29631.m001025 Ricinus communis 29631.m001025 N
SapurV1A.0001s2810 Salix purpurea SapurV1A.0001s2810 N
SELMODRAFT_451590 Selaginella moellendorffii SELMODRAFT_451590 I
SELMODRAFT_430203 Selaginella moellendorffii SELMODRAFT_430203 I
SELMODRAFT_16039 Selaginella moellendorffii SELMODRAFT_16039 I
SELMODRAFT_16038 Selaginella moellendorffii SELMODRAFT_16038 I
Si010685m.g Setaria italica Si010685m.g N
Solyc05g014590.2 Solanum lycopersicum Solyc05g014590.2 I
PGSC0003DMG400017440 Solanum tuberosum PGSC0003DMG400017440 I
Traes_2DL_8BE259F4B Triticum aestivum Traes_2DL_8BE259F4B N
Traes_2BL_070D9E2AD Triticum aestivum Traes_2BL_070D9E2AD N