fgenesh1_pg.scaffold_1000274 (Physcomitrella patens)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh1_pg.scaffold_1000274 T048519_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRM
M09784_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ICE1_01 		0.867 0.688
AMS
M09782_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AMS_01 		0.848 0.646
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_1000274 bHLH 158 205

Links

Other bHLH family TFs
Other Physcomitrella patens TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_gwp_gw1.C_1820005 Physcomitrella patens estExt_gwp_gw1.C_1820005 I 0.914
SELMODRAFT_16038 Selaginella moellendorffii SELMODRAFT_16038 I 0.911
SELMODRAFT_16039 Selaginella moellendorffii SELMODRAFT_16039 I 0.911
SELMODRAFT_430203 Selaginella moellendorffii SELMODRAFT_430203 I 0.911
SELMODRAFT_451590 Selaginella moellendorffii SELMODRAFT_451590 I 0.911
Cla016068 Citrullus lanatus Cla016068 I 0.911
Cucsa.010660 Cucumis sativus Cucsa.010660 I 0.911
e_gw1.25.105.1 Physcomitrella patens e_gw1.25.105.1 I 0.911
estExt_fgenesh1_pg.C_1590022 Physcomitrella patens estExt_fgenesh1_pg.C_1590022 I 0.911
TCM_006602 Theobroma cacao TCM_006602 I 0.898
PK03241.1 Cannabis sativa PK03241.1 I 0.898
estExt_fgenesh1_pg.C_1240017 Physcomitrella patens estExt_fgenesh1_pg.C_1240017 I 0.894
gw1.90.96.1 Physcomitrella patens gw1.90.96.1 I 0.894
GSMUA_Achr1G07330_001 Musa acuminata GSMUA_Achr1G07330_001 I 0.891
GSMUA_Achr1G07450_001 Musa acuminata GSMUA_Achr1G07450_001 I 0.891
PGSC0003DMG400014246 Solanum tuberosum PGSC0003DMG400014246 I 0.891
POPTR_0006s07420 Populus trichocarpa POPTR_0006s07420 I 0.891
Aquca_019_00147 Aquilegia coerulea Aquca_019_00147 I 0.891
Aquca_072_00056 Aquilegia coerulea Aquca_072_00056 I 0.891
evm.TU.supercontig_1024.1 Carica papaya evm.TU.supercontig_1024.1 I 0.891
PDK_20s1347451g001 Phoenix dactylifera PDK_20s1347451g001 I 0.891
PGSC0003DMG400017440 Solanum tuberosum PGSC0003DMG400017440 I 0.887
PRUPE_ppa010972mg Prunus persica PRUPE_ppa010972mg I 0.887
Solyc05g014590.2 Solanum lycopersicum Solyc05g014590.2 I 0.887
Pm008898 Prunus mume Pm008898 I 0.887
GSMUA_Achr10G23370_001 Musa acuminata GSMUA_Achr10G23370_001 I 0.881
GSMUA_Achr7G16000_001 Musa acuminata GSMUA_Achr7G16000_001 I 0.881
Si019518m.g Setaria italica Si019518m.g I 0.881
mgf019723m Mimulus guttatus mgf019723m I 0.881
gene23715-v1.0-hybrid Fragaria vesca gene23715-v1.0-hybrid I 0.881
POPTR_0018s13830 Populus trichocarpa POPTR_0018s13830 I 0.878
VIT_01s0127g00860 Vitis vinifera VIT_01s0127g00860 I 0.878
Eucgr.G01783 Eucalyptus grandis Eucgr.G01783 I 0.878
evm.TU.supercontig_20.95 Carica papaya evm.TU.supercontig_20.95 I 0.878
SapurV1A.0140s0250 Salix purpurea SapurV1A.0140s0250 I 0.878
SapurV1A.3355s0020 Salix purpurea SapurV1A.3355s0020 I 0.878
OBART04G06800 Oryza barthii OBART04G06800 N 0.876
OGLUM04G06590 Oryza glumaepatula OGLUM04G06590 N 0.876
OMERI03G04040 Oryza meridionalis OMERI03G04040 N 0.876
OPUNC04G05620 Oryza punctata OPUNC04G05620 N 0.876
ORGLA04G0051300 Oryza glaberrima ORGLA04G0051300 N 0.876
ORUFI04G07840 Oryza rufipogon ORUFI04G07840 N 0.876
OS04G0300600 Oryza sativa OS04G0300600 N 0.876
PGSC0003DMG400008195 Solanum tuberosum PGSC0003DMG400008195 I 0.874
Solyc08g062780.1 Solanum lycopersicum Solyc08g062780.1 I 0.874
Gorai.008G036900 Gossypium raimondii Gorai.008G036900 I 0.874
PRUPE_ppa022211mg Prunus persica PRUPE_ppa022211mg I 0.868
Pm020879 Prunus mume Pm020879 I 0.868
AMTR_s00016p00170610 Amborella trichopoda AMTR_s00016p00170610 I 0.867
SCRM2 Arabidopsis thaliana AT1G12860 I 0.867
SCRM Arabidopsis thaliana AT3G26744 D 0.867
BGIOSGA000206 Oryza indica BGIOSGA000206 I 0.867
BGIOSGA035358 Oryza indica BGIOSGA035358 I 0.867
Bo00285s440 Brassica oleracea Bo00285s440 I 0.867
Bo5g016510 Brassica oleracea Bo5g016510 I 0.867
Bo7g083870 Brassica oleracea Bo7g083870 I 0.867
Bo8g065080 Brassica oleracea Bo8g065080 I 0.867
Bo9g008020 Brassica oleracea Bo9g008020 I 0.867
Bra016749 Brassica rapa Bra016749 I 0.867
Bra019794 Brassica rapa Bra019794 I 0.867
Bra025226 Brassica rapa Bra025226 I 0.867
Bra032947 Brassica rapa Bra032947 I 0.867
Bra034246 Brassica rapa Bra034246 I 0.867
BRADI2G59497 Brachypodium distachyon BRADI2G59497 I 0.867
F775_14780 Aegilops tauschii F775_14780 I 0.867
ICE1 Arabidopsis lyrata fgenesh2_kg.5__441__AT3G26744.2 I 0.867
GLYMA04G37750 Glycine max GLYMA04G37750 I 0.867
GLYMA06G17330 Glycine max GLYMA06G17330 I 0.867
GLYMA16G05390 Glycine max GLYMA16G05390 I 0.867
GLYMA19G27483 Glycine max GLYMA19G27483 I 0.867
GRMZM2G033356 Zea mays GRMZM2G033356 I 0.867
GRMZM2G172297 Zea mays GRMZM2G172297 I 0.867
GRMZM2G173534 Zea mays GRMZM2G173534 I 0.867
GSMUA_Achr10G12060_001 Musa acuminata GSMUA_Achr10G12060_001 I 0.867
GSMUA_Achr10G18380_001 Musa acuminata GSMUA_Achr10G18380_001 I 0.867
GSMUA_Achr6G08070_001 Musa acuminata GSMUA_Achr6G08070_001 I 0.867
LPERR01G37160 Leersia perrieri LPERR01G37160 I 0.867
LPERR11G11940 Leersia perrieri LPERR11G11940 I 0.867
MLOC_46407 Hordeum vulgare MLOC_46407 I 0.867
MLOC_76805 Hordeum vulgare MLOC_76805 I 0.867
MTR_3g498695 Medicago truncatula MTR_3g498695 I 0.867
OBART01G42600 Oryza barthii OBART01G42600 I 0.867
OBART11G15260 Oryza barthii OBART11G15260 I 0.867
OGLUM01G46870 Oryza glumaepatula OGLUM01G46870 I 0.867
OGLUM11G14700 Oryza glumaepatula OGLUM11G14700 I 0.867
OMERI01G39590 Oryza meridionalis OMERI01G39590 I 0.867
OMERI11G12580 Oryza meridionalis OMERI11G12580 I 0.867
ONIVA01G48650 Oryza nivara ONIVA01G48650 I 0.867
ONIVA12G10770 Oryza nivara ONIVA12G10770 I 0.867
OPUNC01G41620 Oryza punctata OPUNC01G41620 I 0.867
OPUNC11G12640 Oryza punctata OPUNC11G12640 I 0.867
ORGLA01G0363500 Oryza glaberrima ORGLA01G0363500 I 0.867
ORGLA11G0129200 Oryza glaberrima ORGLA11G0129200 I 0.867
ORUFI01G46010 Oryza rufipogon ORUFI01G46010 I 0.867
ORUFI11G16280 Oryza rufipogon ORUFI11G16280 I 0.867
OS01G0928000 Oryza sativa OS01G0928000 I 0.867
OS11G0523700 Oryza sativa OS11G0523700 I 0.867
POPTR_0012s10780 Populus trichocarpa POPTR_0012s10780 I 0.867
POPTR_0015s11650 Populus trichocarpa POPTR_0015s11650 I 0.867
PRUPE_ppa005038mg Prunus persica PRUPE_ppa005038mg I 0.867
PRUPE_ppa018220mg Prunus persica PRUPE_ppa018220mg I 0.867
Sb03g044660 Sorghum bicolor Sb03g044660 I 0.867
Sb05g019530 Sorghum bicolor Sb05g019530 I 0.867
SELMODRAFT_119431 Selaginella moellendorffii SELMODRAFT_119431 I 0.867
SELMODRAFT_138758 Selaginella moellendorffii SELMODRAFT_138758 I 0.867
SELMODRAFT_75047 Selaginella moellendorffii SELMODRAFT_75047 I 0.867
SELMODRAFT_91237 Selaginella moellendorffii SELMODRAFT_91237 I 0.867
SELMODRAFT_94010 Selaginella moellendorffii SELMODRAFT_94010 I 0.867
Si001874m.g Setaria italica Si001874m.g I 0.867
Si006199m.g Setaria italica Si006199m.g I 0.867
Si026212m.g Setaria italica Si026212m.g I 0.867
Solyc03g118310.2 Solanum lycopersicum Solyc03g118310.2 I 0.867
TCM_014741 Theobroma cacao TCM_014741 I 0.867
TCM_017336 Theobroma cacao TCM_017336 I 0.867
TRAES3BF001100060CFD_g Triticum aestivum TRAES3BF001100060CFD_g I 0.867
Traes_7AL_ACAC47D88 Triticum aestivum Traes_7AL_ACAC47D88 I 0.867
Traes_7BL_BF5300D88 Triticum aestivum Traes_7BL_BF5300D88 I 0.867
Traes_7DL_2A7EF919F Triticum aestivum Traes_7DL_2A7EF919F I 0.867
TRIUR3_17003 Triticum urartu TRIUR3_17003 I 0.867
VIT_01s0244g00130 Vitis vinifera VIT_01s0244g00130 I 0.867
VIT_14s0068g01200 Vitis vinifera VIT_14s0068g01200 I 0.867
VIT_17s0000g00330 Vitis vinifera VIT_17s0000g00330 I 0.867
Ca_01394 Cicer arietinum Ca_01394 I 0.867
Cla002682 Citrullus lanatus Cla002682 I 0.867
Cla003283 Citrullus lanatus Cla003283 I 0.867
Pm016093 Prunus mume Pm016093 I 0.867
Pm024587 Prunus mume Pm024587 I 0.867
30147.m014419 Ricinus communis 30147.m014419 I 0.867
cassava17838.valid.m1 Manihot esculenta cassava17838.valid.m1 I 0.867
cassava37254.valid.m1 Manihot esculenta cassava37254.valid.m1 I 0.867
Cucsa.134750 Cucumis sativus Cucsa.134750 I 0.867
Cucsa.156040 Cucumis sativus Cucsa.156040 I 0.867
estExt_fgenesh1_pg.C_300202 Physcomitrella patens estExt_fgenesh1_pg.C_300202 I 0.867
estExt_Genewise1.C_510113 Physcomitrella patens estExt_Genewise1.C_510113 I 0.867
mgf012194m Mimulus guttatus mgf012194m I 0.867
mgf015974m Mimulus guttatus mgf015974m I 0.867
mgf016462m Mimulus guttatus mgf016462m I 0.867
Aquca_100_00035 Aquilegia coerulea Aquca_100_00035 I 0.867
Bostr.0556s0344 Boechera stricta Bostr.0556s0344 I 0.867
Bostr.13671s0164 Boechera stricta Bostr.13671s0164 I 0.867
Cagra.23157s0001 Capsella grandiflora Cagra.23157s0001 I 0.867
Carubv10017099m.g Capsella rubella Carubv10017099m.g I 0.867
Ciclev10015052m.g Citrus clementina Ciclev10015052m.g I 0.867
Eucgr.G01938 Eucalyptus grandis Eucgr.G01938 I 0.867
evm.TU.supercontig_70.77 Carica papaya evm.TU.supercontig_70.77 I 0.867
gene06435-v1.0-hybrid Fragaria vesca gene06435-v1.0-hybrid I 0.867
Gorai.001G275600 Gossypium raimondii Gorai.001G275600 I 0.867
Gorai.007G044800 Gossypium raimondii Gorai.007G044800 I 0.867
Gorai.007G072600 Gossypium raimondii Gorai.007G072600 I 0.867
MDP0000247912 Malus domestica MDP0000247912 I 0.867
MDP0000304669 Malus domestica MDP0000304669 I 0.867
MDP0000662999 Malus domestica MDP0000662999 I 0.867
orange1.1g011370m.g Citrus sinensis orange1.1g011370m.g I 0.867
orange1.1g047004m.g Citrus sinensis orange1.1g047004m.g I 0.867
Pavir.Ea03858 Panicum virgatum Pavir.Ea03858 I 0.867
Pavir.Eb03736 Panicum virgatum Pavir.Eb03736 I 0.867
Pavir.Hb00982 Panicum virgatum Pavir.Hb00982 I 0.867
SapurV1A.0517s0250 Salix purpurea SapurV1A.0517s0250 I 0.867
SapurV1A.0672s0200 Salix purpurea SapurV1A.0672s0200 I 0.867
SapurV1A.0774s0030 Salix purpurea SapurV1A.0774s0030 I 0.867
Thhalv10004059m.g Eutrema salsugineum Thhalv10004059m.g I 0.867
Thhalv10007566m.g Eutrema salsugineum Thhalv10007566m.g I 0.867
PK06841.1 Cannabis sativa PK06841.1 I 0.867
PK06940.1 Cannabis sativa PK06940.1 I 0.867
chr1.CM1880.50.nc Lotus japonicus chr1.CM1880.50.nc I 0.867
LjSGA_024382.1 Lotus japonicus LjSGA_024382.1 I 0.867
AMTR_s00019p00254380 Amborella trichopoda AMTR_s00019p00254380 I 0.861
BGIOSGA007229 Oryza indica BGIOSGA007229 I 0.861
BRADI3G01910 Brachypodium distachyon BRADI3G01910 I 0.861
GLYMA16G26291 Glycine max GLYMA16G26291 I 0.861
MLOC_52192 Hordeum vulgare MLOC_52192 I 0.861
OBART02G01550 Oryza barthii OBART02G01550 I 0.861
OGLUM02G01420 Oryza glumaepatula OGLUM02G01420 I 0.861
OMERI02G00890 Oryza meridionalis OMERI02G00890 I 0.861
ONIVA02G01430 Oryza nivara ONIVA02G01430 I 0.861
OPUNC02G01010 Oryza punctata OPUNC02G01010 I 0.861
ORGLA02G0014200 Oryza glaberrima ORGLA02G0014200 I 0.861
ORUFI02G01530 Oryza rufipogon ORUFI02G01530 I 0.861
TDR Oryza sativa OS02G0120500 I 0.861
Sb04g001650 Sorghum bicolor Sb04g001650 I 0.861
Si006500m.g Setaria italica Si006500m.g I 0.861
Traes_6AS_4C2F64614 Triticum aestivum Traes_6AS_4C2F64614 I 0.861
mgf024029m Mimulus guttatus mgf024029m I 0.861
Gorai.009G002200 Gossypium raimondii Gorai.009G002200 I 0.861
Pavir.Ab00204 Panicum virgatum Pavir.Ab00204 I 0.861
BGIOSGA040642 Oryza indica BGIOSGA040642 N 0.857
BRADI5G05110 Brachypodium distachyon BRADI5G05110 N 0.857
GLYMA09G06770 Glycine max GLYMA09G06770 I 0.857
GLYMA15G18070 Glycine max GLYMA15G18070 I 0.857
GRMZM2G042893 Zea mays GRMZM2G042893 N 0.857
GRMZM2G042895 Zea mays GRMZM2G042895 N 0.857
LPERR04G04520 Leersia perrieri LPERR04G04520 N 0.857
MLOC_62844 Hordeum vulgare MLOC_62844 N 0.857
MTR_2g038040 Medicago truncatula MTR_2g038040 I 0.857
OMERI03G04020 Oryza meridionalis OMERI03G04020 N 0.857
ONIVA01G07170 Oryza nivara ONIVA01G07170 N 0.857
OPUNC04G05630 Oryza punctata OPUNC04G05630 N 0.857
ORUFI04G07860 Oryza rufipogon ORUFI04G07860 N 0.857
OS04G0301500 Oryza sativa OS04G0301500 N 0.857
PGSC0003DMG400004087 Solanum tuberosum PGSC0003DMG400004087 I 0.857
POPTR_0018s13860 Populus trichocarpa POPTR_0018s13860 I 0.857
Sb07g004190 Sorghum bicolor Sb07g004190 N 0.857
Si010413m.g Setaria italica Si010413m.g N 0.857
Si010812m.g Setaria italica Si010812m.g N 0.857
Solyc07g018010.2 Solanum lycopersicum Solyc07g018010.2 I 0.857
TCM_039471 Theobroma cacao TCM_039471 I 0.857
Traes_2BL_8FED05903 Triticum aestivum Traes_2BL_8FED05903 N 0.857
Traes_2DL_DE3909A32 Triticum aestivum Traes_2DL_DE3909A32 N 0.857
VIT_11s0052g00100 Vitis vinifera VIT_11s0052g00100 I 0.857
30198.m000869 Ricinus communis 30198.m000869 I 0.857
cassava2997.m1 Manihot esculenta cassava2997.m1 I 0.857
Aquca_018_00039 Aquilegia coerulea Aquca_018_00039 I 0.857
Ciclev10009285m.g Citrus clementina Ciclev10009285m.g I 0.857
Eucgr.C02208 Eucalyptus grandis Eucgr.C02208 I 0.857
gene17273-v1.0-hybrid Fragaria vesca gene17273-v1.0-hybrid I 0.857
Gorai.013G242800 Gossypium raimondii Gorai.013G242800 I 0.857
Lus10006951.g Linum usitatissimum Lus10006951.g I 0.857
MDP0000133262 Malus domestica MDP0000133262 I 0.857
MDP0000318229 Malus domestica MDP0000318229 I 0.857
orange1.1g025665m.g Citrus sinensis orange1.1g025665m.g I 0.857
Pavir.Ga02256 Panicum virgatum Pavir.Ga02256 N 0.857
Pavir.Gb02205 Panicum virgatum Pavir.Gb02205 N 0.857
SapurV1A.0140s0210 Salix purpurea SapurV1A.0140s0210 I 0.857
Pavir.Ga02255 Panicum virgatum Pavir.Ga02255 N 0.856
GSMUA_Achr11G09640_001 Musa acuminata GSMUA_Achr11G09640_001 I 0.855
MTR_7g083900 Medicago truncatula MTR_7g083900 I 0.855
Ca_23892 Cicer arietinum Ca_23892 I 0.855
Pavir.Ha01426 Panicum virgatum Pavir.Ha01426 I 0.855
GRMZM2G139372 Zea mays GRMZM2G139372 N 0.854
POPTR_0018s13850 Populus trichocarpa POPTR_0018s13850 I 0.854
Lus10030609.g Linum usitatissimum Lus10030609.g N 0.854
SapurV1A.0140s0240 Salix purpurea SapurV1A.0140s0240 I 0.854
SapurV1A.3355s0010 Salix purpurea SapurV1A.3355s0010 I 0.854
BGIOSGA015389 Oryza indica BGIOSGA015389 N 0.852
ONIVA01G07150 Oryza nivara ONIVA01G07150 N 0.852
MDP0000243628 Malus domestica MDP0000243628 I 0.849
AMS Arabidopsis thaliana AT2G16910 D 0.848
Bo3g091780 Brassica oleracea Bo3g091780 I 0.848
Bo7g016210 Brassica oleracea Bo7g016210 I 0.848
Bra002004 Brassica rapa Bra002004 I 0.848
Bra013041 Brassica rapa Bra013041 I 0.848
AMS Arabidopsis lyrata fgenesh2_kg.3__3272__AT2G16910.1 I 0.848
GLYMA10G42830 Glycine max GLYMA10G42830 I 0.848
GLYMA20G24170 Glycine max GLYMA20G24170 I 0.848
MTR_1g112680 Medicago truncatula MTR_1g112680 I 0.848
AMS Populus trichocarpa POPTR_0009s13860 I 0.848
POPTR_0018s13840 Populus trichocarpa POPTR_0018s13840 I 0.848
Ca_05416 Cicer arietinum Ca_05416 I 0.848
Ca_23693 Cicer arietinum Ca_23693 I 0.848
Ca_23694 Cicer arietinum Ca_23694 I 0.848
Bostr.18351s0148 Boechera stricta Bostr.18351s0148 I 0.848
Cagra.10862s0002 Capsella grandiflora Cagra.10862s0002 I 0.848
Carubv10016240m.g Capsella rubella Carubv10016240m.g I 0.848
gene23716-v1.0-hybrid Fragaria vesca gene23716-v1.0-hybrid I 0.848
MDP0000405748 Malus domestica MDP0000405748 I 0.848
SapurV1A.0001s2820 Salix purpurea SapurV1A.0001s2820 I 0.848
SapurV1A.0218s0460 Salix purpurea SapurV1A.0218s0460 I 0.848
Thhalv10022620m.g Eutrema salsugineum Thhalv10022620m.g I 0.848
LjSGA_106153.1 Lotus japonicus LjSGA_106153.1 I 0.848
SapurV1A.0001s2810 Salix purpurea SapurV1A.0001s2810 N 0.846
AMTR_s00096p00160080 Amborella trichopoda AMTR_s00096p00160080 I 0.845
GSMUA_Achr6G30900_001 Musa acuminata GSMUA_Achr6G30900_001 N 0.844
gw1.257.54.1 Physcomitrella patens gw1.257.54.1 I 0.843
MDP0000219146 Malus domestica MDP0000219146 I 0.843
gene00631-v1.0-hybrid Fragaria vesca gene00631-v1.0-hybrid N 0.842
SCRM2 Arabidopsis lyrata Al_scaffold_0001_1326 I 0.840