Lus10016018.g (Linum usitatissimum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Lus10016018.g T321175_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.878 0.878
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10016018 RWP-RK 556 604

Links

Other RWP-RK family TFs
Other Linum usitatissimum TFs

414 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FRS12 Arabidopsis thaliana AT5G18960 N 0.000
FRS7 Arabidopsis thaliana AT3G06250 N 0.000
Bostr.26527s0315 Boechera stricta Bostr.26527s0315 N 0.000
Bostr.2570s0035 Boechera stricta Bostr.2570s0035 N 0.000
Bo3g013440 Brassica oleracea Bo3g013440 N 0.000
PK22885.1 Cannabis sativa PK22885.1 N 0.000
Cagra.0263s0023 Capsella grandiflora Cagra.0263s0023 N 0.000
Cagra.3793s0006 Capsella grandiflora Cagra.3793s0006 N 0.000
Carubv10013017m.g Capsella rubella Carubv10013017m.g N 0.000
Carubv10000255m.g Capsella rubella Carubv10000255m.g N 0.000
evm.TU.supercontig_16.55 Carica papaya evm.TU.supercontig_16.55 N 0.000
Ciclev10004376m.g Citrus clementina Ciclev10004376m.g N 0.000
orange1.1g004138m.g Citrus sinensis orange1.1g004138m.g N 0.000
Cucsa.253860 Cucumis sativus Cucsa.253860 N 0.000
Thhalv10020128m.g Eutrema salsugineum Thhalv10020128m.g N 0.000
Thhalv10012731m.g Eutrema salsugineum Thhalv10012731m.g N 0.000
gene06133-v1.0-hybrid Fragaria vesca gene06133-v1.0-hybrid N 0.000
GLYMA13G28230 Glycine max GLYMA13G28230 N 0.000
GLYMA15G10830 Glycine max GLYMA15G10830 N 0.000
Gorai.006G255400 Gossypium raimondii Gorai.006G255400 N 0.000
MDP0000254218 Malus domestica MDP0000254218 N 0.000
MDP0000295749 Malus domestica MDP0000295749 N 0.000
mgf011099m Mimulus guttatus mgf011099m N 0.000
mgf010461m Mimulus guttatus mgf010461m N 0.000
POPTR_0008s20380 Populus trichocarpa POPTR_0008s20380 N 0.000
POPTR_0010s03000 Populus trichocarpa POPTR_0010s03000 N 0.000
Pm008044 Prunus mume Pm008044 N 0.000
PRUPE_ppa001884mg Prunus persica PRUPE_ppa001884mg N 0.000
SapurV1A.0152s0560 Salix purpurea SapurV1A.0152s0560 N 0.000
SapurV1A.0407s0270 Salix purpurea SapurV1A.0407s0270 N 0.000
SapurV1A.1026s0020 Salix purpurea SapurV1A.1026s0020 N 0.000
Solyc10g084220.1 Solanum lycopersicum Solyc10g084220.1 N 0.000
TCM_021065 Theobroma cacao TCM_021065 N 0.000