fgenesh2_pg.scaffold_489000019 (Branchiostoma floridae)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01342 (SAND) IPR000770 fgenesh2_pg.scaffold_489000019 T322200_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q4RVQ8_TETNG
M02466_2.00 		Tetraodon nigroviridis
NNNNDCGRNN
NNYCGHNNNN		 PBM
Weirauch et al.(2014)
pTH6271 		0.989 0.855
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_489000019 SAND 164 239

Links

Other SAND family TFs
Other Branchiostoma floridae TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG015369.1 Alligator sinensis Alligator_sinensis_CCG015369.1 I 0.936
ENSAMXG00000012918 Astyanax mexicanus ENSAMXG00000012918 I 0.987
BGLB005418 Biomphalaria glabrata BGLB005418 I 0.958
SAMD11 Canis familiaris ENSCAFG00000019373 I 0.983
samd11 Danio rerio ENSDARG00000077852 I 0.989
SAMD11 Dasypus novemcinctus ENSDNOG00000041400 I 0.983
HelroG194341 Helobdella robusta HelroG194341 I 0.879
ISCW014501 Ixodes scapularis ISCW014501 I 0.930
ENSLACG00000017131 Latimeria chalumnae ENSLACG00000017131 I 0.989
ENSLOCG00000007210 Lepisosteus oculatus ENSLOCG00000007210 I 0.987
LotgiG229327 Lottia gigantea LotgiG229327 I 0.863
ENSMODG00000029151 Monodelphis domestica ENSMODG00000029151 I 0.983
Myotis_brandtii_SAMD11_10009655 Myotis brandtii Myotis_brandtii_SAMD11_10009655 I 0.983
ENSOARG00000008099 Ovis aries ENSOARG00000008099 I 0.983
SMAR002327 Strigamia maritima SMAR002327 I 0.901
SMAR002818 Strigamia maritima SMAR002818 I 0.935
SPU_022540 Strongylocentrotus purpuratus SPU_022540 I 0.905
Q4RVQ8_TETNG Tetraodon nigroviridis Q4RVQ8_TETNG D 0.989
XP_002936428 Xenopus tropicalis XP_002936428 I 0.988