GLYMA15G21860 (Glycine max)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 GLYMA15G21860 T322591_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.980 0.907
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.975 0.867
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.975 0.867
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.975 0.867
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.971 0.853
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.970 0.813
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.969 0.813
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.969 0.813
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.969 0.813
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.968 0.760
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.966 0.800
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.960 0.800
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.947 0.680
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.942 0.693
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.936 0.667
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.936 0.667
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.936 0.667
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.934 0.680
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.934 0.680
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.934 0.680
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA15G21860.1 SBP 148 222
GLYMA15G21860.2 SBP 148 222

Links

Other SBP family TFs
Other Glycine max TFs

490 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_600421.1 Arabidopsis lyrata scaffold_600421.1 I
AT5G04760 Arabidopsis thaliana AT5G04760 D
Bostr.13129s0486 Boechera stricta Bostr.13129s0486 I
Bo2g006670 Brassica oleracea Bo2g006670 I
Bo9g178980 Brassica oleracea Bo9g178980 I
Bra005818 Brassica rapa Bra005818 I
Bra009432 Brassica rapa Bra009432 I
Bra028780 Brassica rapa Bra028780 I
Cagra.5249s0014 Capsella grandiflora Cagra.5249s0014 I
Carubv10003623m.g Capsella rubella Carubv10003623m.g I
Ca_05454 Cicer arietinum Ca_05454 I
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I
Thhalv10014613m.g Eutrema salsugineum Thhalv10014613m.g I
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I
GLYMA10G42450 Glycine max GLYMA10G42450 I
GLYMA20G24600 Glycine max GLYMA20G24600 I
Gorai.006G118200 Gossypium raimondii Gorai.006G118200 I
MDP0000289018 Malus domestica MDP0000289018 I
MTR_1g111830 Medicago truncatula MTR_1g111830 I
POPTR_0010s24710 Populus trichocarpa POPTR_0010s24710 I
Pm017050 Prunus mume Pm017050 I
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I
30055.m001589 Ricinus communis 30055.m001589 I
30155.m001616 Ricinus communis 30155.m001616 I
SapurV1A.0036s0350 Salix purpurea SapurV1A.0036s0350 I
SapurV1A.0450s0110 Salix purpurea SapurV1A.0450s0110 I
SapurV1A.1671s0040 Salix purpurea SapurV1A.1671s0040 I
TCM_041160 Theobroma cacao TCM_041160 I
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I