30055.m001589 (Ricinus communis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 30055.m001589 T283857_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04760
M02304_2.00 		Arabidopsis thaliana
NDGATAAGGN
NCCTTATCHN		 PBM
Weirauch et al.(2014)
pTH7079 		0.671 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30055.m001589 Myb 107 154

Links

Other Myb/SANT family TFs
Other Ricinus communis TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava42566.valid.m1 Manihot esculenta cassava42566.valid.m1 N 0.827
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I 0.791
Ciclev10029205m.g Citrus clementina Ciclev10029205m.g N 0.730
orange1.1g026855m.g Citrus sinensis orange1.1g026855m.g N 0.730
SapurV1A.1671s0040 Salix purpurea SapurV1A.1671s0040 I 0.729
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.721
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.721
Aquca_072_00078 Aquilegia coerulea Aquca_072_00078 N 0.710
SapurV1A.0450s0110 Salix purpurea SapurV1A.0450s0110 I 0.704
Cla013899 Citrullus lanatus Cla013899 N 0.703
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.696
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.695
Pm017050 Prunus mume Pm017050 I 0.695
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.695
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.691
TCM_041160 Theobroma cacao TCM_041160 I 0.689
VIT_18s0001g02210 Vitis vinifera VIT_18s0001g02210 N 0.689
Ca_05454 Cicer arietinum Ca_05454 I 0.681
Cucsa.364590 Cucumis sativus Cucsa.364590 N 0.681
MDP0000289018 Malus domestica MDP0000289018 I 0.678
PGSC0003DMG400023495 Solanum tuberosum PGSC0003DMG400023495 N 0.677
Solyc05g055240.2 Solanum lycopersicum Solyc05g055240.2 N 0.677
TCM_041362 Theobroma cacao TCM_041362 N 0.676
Cla020348 Citrullus lanatus Cla020348 I 0.676
SapurV1A.0036s0350 Salix purpurea SapurV1A.0036s0350 I 0.673
AT5G04760 Arabidopsis thaliana AT5G04760 D 0.671
Bo3g002960 Brassica oleracea Bo3g002960 I 0.671
Bo9g178980 Brassica oleracea Bo9g178980 I 0.671
Bra005818 Brassica rapa Bra005818 I 0.671
Bra009432 Brassica rapa Bra009432 I 0.671
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.671
scaffold_600421.1 Arabidopsis lyrata scaffold_600421.1 I 0.671
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.671
Bostr.13129s0486 Boechera stricta Bostr.13129s0486 I 0.671
Cagra.5249s0014 Capsella grandiflora Cagra.5249s0014 I 0.671
Carubv10003623m.g Capsella rubella Carubv10003623m.g I 0.671
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.670
GSMUA_Achr11G09110_001 Musa acuminata GSMUA_Achr11G09110_001 N 0.669
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.666
Gorai.006G113100 Gossypium raimondii Gorai.006G113100 N 0.663