TCM_031595 (Theobroma cacao)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 TCM_031595 T323090_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.966 0.747
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.966 0.853
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.960 0.773
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.957 0.733
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.957 0.733
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.957 0.733
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.956 0.733
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.956 0.707
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.956 0.760
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.955 0.760
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.955 0.760
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.955 0.760
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.951 0.720
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.948 0.747
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.945 0.733
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.945 0.733
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.945 0.733
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.940 0.800
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.940 0.800
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.940 0.800
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.914 0.627
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY13068 SBP 68 142
EOY13069 SBP 113 187

Links

Other SBP family TFs
Other Theobroma cacao TFs

562 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_072_00142 Aquilegia coerulea Aquca_072_00142 I
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I
ABF2 Arabidopsis thaliana AT1G45249 D
ABF1 Arabidopsis thaliana AT1G49720 D
ABF4 Arabidopsis thaliana AT3G19290 D
ABF3 Arabidopsis thaliana AT4G34000 D
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I
Bo1g114840 Brassica oleracea Bo1g114840 I
Bo6g006970 Brassica oleracea Bo6g006970 I
Bo6g018480 Brassica oleracea Bo6g018480 I
Bo7g116570 Brassica oleracea Bo7g116570 I
Bra011485 Brassica rapa Bra011485 I
Bra018800 Brassica rapa Bra018800 I
Bra040260 Brassica rapa Bra040260 I
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I
Carubv10009177m.g Capsella rubella Carubv10009177m.g I
Carubv10009399m.g Capsella rubella Carubv10009399m.g I
Carubv10013729m.g Capsella rubella Carubv10013729m.g I
Ca_00791 Cicer arietinum Ca_00791 I
Ca_06458 Cicer arietinum Ca_06458 I
Cla016272 Citrullus lanatus Cla016272 I
Cla022926 Citrullus lanatus Cla022926 I
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I
Cucsa.219780 Cucumis sativus Cucsa.219780 I
Cucsa.385090 Cucumis sativus Cucsa.385090 I
Cucsa.396070 Cucumis sativus Cucsa.396070 I
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I
gene30280-v1.0-hybrid Fragaria vesca gene30280-v1.0-hybrid I
GLYMA07G33600 Glycine max GLYMA07G33600 I
GLYMA10G08370 Glycine max GLYMA10G08370 I
GLYMA13G22061 Glycine max GLYMA13G22061 I
GLYMA19G37910 Glycine max GLYMA19G37910 I
Gorai.002G240500 Gossypium raimondii Gorai.002G240500 I
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I
MLOC_61490 Hordeum vulgare MLOC_61490 I
MLOC_66546 Hordeum vulgare MLOC_66546 I
LPERR06G06440 Leersia perrieri LPERR06G06440 I
LPERR08G14740 Leersia perrieri LPERR08G14740 I
Lus10009755.g Linum usitatissimum Lus10009755.g I
Lus10014194.g Linum usitatissimum Lus10014194.g I
Lus10017049.g Linum usitatissimum Lus10017049.g I
Lus10021369.g Linum usitatissimum Lus10021369.g I
Lus10022720.g Linum usitatissimum Lus10022720.g I
Lus10027897.g Linum usitatissimum Lus10027897.g I
chr1.CM0010.310.nd Lotus japonicus chr1.CM0010.310.nd I
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I
MDP0000144105 Malus domestica MDP0000144105 I
MDP0000177486 Malus domestica MDP0000177486 I
MDP0000231542 Malus domestica MDP0000231542 I
MDP0000248567 Malus domestica MDP0000248567 I
MDP0000296303 Malus domestica MDP0000296303 I
MDP0000701734 Malus domestica MDP0000701734 I
cassava11518.m1 Manihot esculenta cassava11518.m1 I
cassava32856.m1 Manihot esculenta cassava32856.m1 I
MTR_4g085910 Medicago truncatula MTR_4g085910 I
MTR_7g104480 Medicago truncatula MTR_7g104480 I
mgf002176m Mimulus guttatus mgf002176m I
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I
OBART01G37980 Oryza barthii OBART01G37980 I
OBART06G07070 Oryza barthii OBART06G07070 I
OBART08G17810 Oryza barthii OBART08G17810 I
OB06G16510 Oryza brachyantha OB06G16510 I
OB09G19140 Oryza brachyantha OB09G19140 I
ORGLA06G0066000 Oryza glaberrima ORGLA06G0066000 I
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I
OGLUM06G07500 Oryza glumaepatula OGLUM06G07500 I
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I
BGIOSGA022536 Oryza indica BGIOSGA022536 I
BGIOSGA028831 Oryza indica BGIOSGA028831 I
BGIOSGA040605 Oryza indica BGIOSGA040605 I
OLONG_000475 Oryza longistaminata OLONG_000475 I
OMERI06G08210 Oryza meridionalis OMERI06G08210 I
ONIVA04G25730 Oryza nivara ONIVA04G25730 I
ONIVA06G08350 Oryza nivara ONIVA06G08350 I
ONIVA08G19830 Oryza nivara ONIVA08G19830 I
OPUNC05G18710 Oryza punctata OPUNC05G18710 I
OPUNC06G06690 Oryza punctata OPUNC06G06690 I
OPUNC08G15700 Oryza punctata OPUNC08G15700 I
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I
OS03G0322700 Oryza sativa OS03G0322700 I
OS08G0471950 Oryza sativa OS08G0471950 D
Pavir.J31353 Panicum virgatum Pavir.J31353 I
ABI5 Populus trichocarpa POPTR_0006s08300 I
Pm005288 Prunus mume Pm005288 I
Pm026185 Prunus mume Pm026185 I
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I
PRUPE_ppa019833mg Prunus persica PRUPE_ppa019833mg I
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I
SELMODRAFT_177659 Selaginella moellendorffii SELMODRAFT_177659 I
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I
SELMODRAFT_91900 Selaginella moellendorffii SELMODRAFT_91900 I
SELMODRAFT_94516 Selaginella moellendorffii SELMODRAFT_94516 I
Si013904m.g Setaria italica Si013904m.g I
Si030114m.g Setaria italica Si030114m.g I
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I
PGSC0003DMG400002660 Solanum tuberosum PGSC0003DMG400002660 I
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I
Sb06g026410 Sorghum bicolor Sb06g026410 I
Sb07g022965 Sorghum bicolor Sb07g022965 I
Sb08g003760 Sorghum bicolor Sb08g003760 I
Sb10g007090 Sorghum bicolor Sb10g007090 I
TCM_007074 Theobroma cacao TCM_007074 I
TCM_022574 Theobroma cacao TCM_022574 I
TCM_033824 Theobroma cacao TCM_033824 I
Traes_4AS_F9C171219 Triticum aestivum Traes_4AS_F9C171219 I
Traes_4BL_4C9A415F3 Triticum aestivum Traes_4BL_4C9A415F3 I
Traes_4DL_F38ED7FB6 Triticum aestivum Traes_4DL_F38ED7FB6 I
TRIUR3_15490 Triticum urartu TRIUR3_15490 I
TRIUR3_26781 Triticum urartu TRIUR3_26781 I
TRIUR3_29638 Triticum urartu TRIUR3_29638 I
DPBF2 Vitis vinifera VIT_06s0080g00340 I
GRMZM2G002075 Zea mays GRMZM2G002075 I
GRMZM2G157722 Zea mays GRMZM2G157722 I
GRMZM2G478417 Zea mays GRMZM2G478417 I