orange1.1g046578m.g (Citrus sinensis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 orange1.1g046578m.g T324226_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g046578m Sigma 70 146 216

Links

Other Sigma 70 family TFs
Other Citrus sinensis TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N 0.789
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.845
SIG4 Arabidopsis lyrata scaffold_601382.1 N 0.750
SIGD Arabidopsis thaliana AT5G13730 N 0.845
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.845
Bo2g011520 Brassica oleracea Bo2g011520 N 0.859
Bo9g166510 Brassica oleracea Bo9g166510 N 0.859
Bra008807 Brassica rapa Bra008807 N 0.859
Bra023430 Brassica rapa Bra023430 N 0.859
PK06863.1 Cannabis sativa PK06863.1 N 0.746
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.845
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.845
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.831
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.986
Cucsa.248920 Cucumis sativus Cucsa.248920 N 0.704
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.859
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.817
LjSGA_045184.1 Lotus japonicus LjSGA_045184.1 N 0.718
MDP0000266956 Malus domestica MDP0000266956 N 0.704
MDP0000235160 Malus domestica MDP0000235160 N 0.732
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.732
MTR_3g033420 Medicago truncatula MTR_3g033420 N 0.704
mgf003626m Mimulus guttatus mgf003626m N 0.732
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.746
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.746
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.803
Pm016510 Prunus mume Pm016510 N 0.789
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.789
29864.m001444 Ricinus communis 29864.m001444 N 0.704
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.789
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.789
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N 0.775
PGSC0003DMG402006783 Solanum tuberosum PGSC0003DMG402006783 N 0.775
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.817