CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bo8g081200
(
Brassica oleracea
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Bo8g081200
T326670_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.669
0.739
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo8g081200.1
Sox
49
118
PKRAPSAFFVFLEDFRQTFKKENPDVKAVSAVGKAGGQKWKSMSQAEKAPYEEQAAKRKAEYEKQMDAYN
Links
Other
Sox
family TFs
Other
Brassica oleracea
TFs
303 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_32974
Aegilops tauschii
F775_32974
N
BRADI2G52227
Brachypodium distachyon
BRADI2G52227
N
BRADI4G03867
Brachypodium distachyon
BRADI4G03867
N
MLOC_21297
Hordeum vulgare
MLOC_21297
N
LPERR12G13750
Leersia perrieri
LPERR12G13750
N
OBART11G23670
Oryza barthii
OBART11G23670
N
OBART12G16530
Oryza barthii
OBART12G16530
N
OB12G23410
Oryza brachyantha
OB12G23410
N
ORGLA12G0207400
Oryza glaberrima
ORGLA12G0207400
N
ORGLA12G0145700
Oryza glaberrima
ORGLA12G0145700
N
ORGLA11G0190300
Oryza glaberrima
ORGLA11G0190300
N
OGLUM12G18120
Oryza glumaepatula
OGLUM12G18120
N
BGIOSGA037646
Oryza indica
BGIOSGA037646
N
OMERI12G11530
Oryza meridionalis
OMERI12G11530
N
ONIVA12G14900
Oryza nivara
ONIVA12G14900
N
ONIVA11G23190
Oryza nivara
ONIVA11G23190
N
OPUNC12G15050
Oryza punctata
OPUNC12G15050
N
ORUFI11G25550
Oryza rufipogon
ORUFI11G25550
N
ORUFI12G18360
Oryza rufipogon
ORUFI12G18360
N
Pavir.Ha00317
Panicum virgatum
Pavir.Ha00317
N
Pavir.J08330
Panicum virgatum
Pavir.J08330
N
Pavir.J28748
Panicum virgatum
Pavir.J28748
N
Pavir.J38998
Panicum virgatum
Pavir.J38998
N
Sb08g018940
Sorghum bicolor
Sb08g018940
N
Traes_5BS_ED54C58C5
Triticum aestivum
Traes_5BS_ED54C58C5
N
Traes_5DS_C06FE6037
Triticum aestivum
Traes_5DS_C06FE6037
N
TRIUR3_22881
Triticum urartu
TRIUR3_22881
N
GRMZM2G179325
Zea mays
GRMZM2G179325
N
GRMZM2G159475
Zea mays
GRMZM2G159475
N