Bo8g081200 (Brassica oleracea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bo8g081200 T326670_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.669 0.739
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g081200.1 Sox 49 118

Links

Other Sox family TFs
Other Brassica oleracea TFs

303 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_32974 Aegilops tauschii F775_32974 N
BRADI2G52227 Brachypodium distachyon BRADI2G52227 N
BRADI4G03867 Brachypodium distachyon BRADI4G03867 N
MLOC_21297 Hordeum vulgare MLOC_21297 N
LPERR12G13750 Leersia perrieri LPERR12G13750 N
OBART11G23670 Oryza barthii OBART11G23670 N
OBART12G16530 Oryza barthii OBART12G16530 N
OB12G23410 Oryza brachyantha OB12G23410 N
ORGLA12G0207400 Oryza glaberrima ORGLA12G0207400 N
ORGLA12G0145700 Oryza glaberrima ORGLA12G0145700 N
ORGLA11G0190300 Oryza glaberrima ORGLA11G0190300 N
OGLUM12G18120 Oryza glumaepatula OGLUM12G18120 N
BGIOSGA037646 Oryza indica BGIOSGA037646 N
OMERI12G11530 Oryza meridionalis OMERI12G11530 N
ONIVA12G14900 Oryza nivara ONIVA12G14900 N
ONIVA11G23190 Oryza nivara ONIVA11G23190 N
OPUNC12G15050 Oryza punctata OPUNC12G15050 N
ORUFI11G25550 Oryza rufipogon ORUFI11G25550 N
ORUFI12G18360 Oryza rufipogon ORUFI12G18360 N
Pavir.Ha00317 Panicum virgatum Pavir.Ha00317 N
Pavir.J08330 Panicum virgatum Pavir.J08330 N
Pavir.J28748 Panicum virgatum Pavir.J28748 N
Pavir.J38998 Panicum virgatum Pavir.J38998 N
Sb08g018940 Sorghum bicolor Sb08g018940 N
Traes_5BS_ED54C58C5 Triticum aestivum Traes_5BS_ED54C58C5 N
Traes_5DS_C06FE6037 Triticum aestivum Traes_5DS_C06FE6037 N
TRIUR3_22881 Triticum urartu TRIUR3_22881 N
GRMZM2G179325 Zea mays GRMZM2G179325 N
GRMZM2G159475 Zea mays GRMZM2G159475 N