CBG16280 (Caenorhabditis briggsae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 CBG16280 T326868_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
CBG16280 Sox 36 104
CBG16280 Sox 110 178

Links

Other Sox family TFs
Other Caenorhabditis briggsae TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_001_00822 Aquilegia coerulea Aquca_001_00822 I 0.000
HY5 Arabidopsis lyrata scaffold_601144.1 I 0.000
HYH Arabidopsis lyrata fgenesh2_kg.3__1938__AT3G17609.2 I 0.000
HY5 Arabidopsis thaliana AT5G11260 D 0.000
HYH Arabidopsis thaliana AT3G17609 D 0.000
Bostr.23997s0021 Boechera stricta Bostr.23997s0021 I 0.000
Bostr.19424s0909 Boechera stricta Bostr.19424s0909 I 0.000
BRADI1G36750 Brachypodium distachyon BRADI1G36750 I 0.000
BRADI3G07540 Brachypodium distachyon BRADI3G07540 I 0.000
Bo9g171430 Brassica oleracea Bo9g171430 I 0.000
Bo5g122830 Brassica oleracea Bo5g122830 I 0.000
Bo3g069000 Brassica oleracea Bo3g069000 I 0.000
Bo2g010330 Brassica oleracea Bo2g010330 I 0.000
Bra021258 Brassica rapa Bra021258 I 0.000
Bra022225 Brassica rapa Bra022225 I 0.000
Bra023317 Brassica rapa Bra023317 I 0.000
Bra008976 Brassica rapa Bra008976 I 0.000
Bra001671 Brassica rapa Bra001671 I 0.000
PK17235.1 Cannabis sativa PK17235.1 I 0.000
Cagra.4396s0065 Capsella grandiflora Cagra.4396s0065 I 0.000
Cagra.7526s0027 Capsella grandiflora Cagra.7526s0027 I 0.000
evm.TU.supercontig_115.9 Carica papaya evm.TU.supercontig_115.9 I 0.000
evm.TU.supercontig_146.5 Carica papaya evm.TU.supercontig_146.5 N 0.000
Ca_21380 Cicer arietinum Ca_21380 I 0.000
Ca_22618 Cicer arietinum Ca_22618 I 0.000
Cla022656 Citrullus lanatus Cla022656 I 0.000
Ciclev10009720m.g Citrus clementina Ciclev10009720m.g I 0.000
orange1.1g030957m.g Citrus sinensis orange1.1g030957m.g I 0.000
Cucsa.162360 Cucumis sativus Cucsa.162360 I 0.000
Cucsa.310450 Cucumis sativus Cucsa.310450 I 0.000
Eucgr.C02802 Eucalyptus grandis Eucgr.C02802 I 0.000
Thhalv10004860m.g Eutrema salsugineum Thhalv10004860m.g I 0.000
Thhalv10014851m.g Eutrema salsugineum Thhalv10014851m.g I 0.000
Thhalv10021704m.g Eutrema salsugineum Thhalv10021704m.g I 0.000
gene22776-v1.0-hybrid Fragaria vesca gene22776-v1.0-hybrid N 0.000
gene11666-v1.0-hybrid Fragaria vesca gene11666-v1.0-hybrid I 0.000
GLYMA03G18990 Glycine max GLYMA03G18990 I 0.000
GLYMA08G41450 Glycine max GLYMA08G41450 I 0.000
Q39895_SOYBN Glycine max Q39895_SOYBN D 0.000
GLYMA16G13570 Glycine max GLYMA16G13570 I 0.000
GLYMA18G14750 Glycine max GLYMA18G14750 I 0.000
Lus10002900.g Linum usitatissimum Lus10002900.g I 0.000
LjB12O06.40.nc Lotus japonicus LjB12O06.40.nc I 0.000
chr6.LjT14A08.90.nd Lotus japonicus chr6.LjT14A08.90.nd I 0.000
MDP0000834642 Malus domestica MDP0000834642 I 0.000
MDP0000586302 Malus domestica MDP0000586302 I 0.000
MDP0000279891 Malus domestica MDP0000279891 N 0.000
MDP0000264514 Malus domestica MDP0000264514 I 0.000
cassava328.valid.m1 Manihot esculenta cassava328.valid.m1 I 0.000
cassava8163.valid.m1 Manihot esculenta cassava8163.valid.m1 I 0.000
MTR_3g436010 Medicago truncatula MTR_3g436010 I 0.000
MTR_7g057160 Medicago truncatula MTR_7g057160 I 0.000
mgf012104m Mimulus guttatus mgf012104m I 0.000
mgf014305m Mimulus guttatus mgf014305m I 0.000
GSMUA_Achr10G27050_001 Musa acuminata GSMUA_Achr10G27050_001 I 0.000
GSMUA_Achr5G06060_001 Musa acuminata GSMUA_Achr5G06060_001 I 0.000
GSMUA_Achr7G09980_001 Musa acuminata GSMUA_Achr7G09980_001 I 0.000
GSMUA_Achr9G28570_001 Musa acuminata GSMUA_Achr9G28570_001 I 0.000
OB02G17160 Oryza brachyantha OB02G17160 I 0.000
ORGLA02G0074000 Oryza glaberrima ORGLA02G0074000 I 0.000
OGLUM02G07920 Oryza glumaepatula OGLUM02G07920 I 0.000
BGIOSGA006916 Oryza indica BGIOSGA006916 I 0.000
ONIVA02G09400 Oryza nivara ONIVA02G09400 I 0.000
OPUNC02G07060 Oryza punctata OPUNC02G07060 I 0.000
OS02G0203000 Oryza sativa OS02G0203000 I 0.000
POPTR_0006s26800 Populus trichocarpa POPTR_0006s26800 I 0.000
POPTR_0010s00680 Populus trichocarpa POPTR_0010s00680 I 0.000
POPTR_0018s01530 Populus trichocarpa POPTR_0018s01530 I 0.000
Pm007163 Prunus mume Pm007163 I 0.000
PRUPE_ppa011967mg Prunus persica PRUPE_ppa011967mg I 0.000
PRUPE_ppa012064mg Prunus persica PRUPE_ppa012064mg I 0.000
29848.m004650 Ricinus communis 29848.m004650 I 0.000
29889.m003420 Ricinus communis 29889.m003420 I 0.000
SapurV1A.0043s0530 Salix purpurea SapurV1A.0043s0530 I 0.000
SapurV1A.3812s0010 Salix purpurea SapurV1A.3812s0010 I 0.000
SapurV1A.2641s0040 Salix purpurea SapurV1A.2641s0040 I 0.000
SapurV1A.1258s0140 Salix purpurea SapurV1A.1258s0140 I 0.000
SapurV1A.0264s0450 Salix purpurea SapurV1A.0264s0450 I 0.000
SapurV1A.0073s0400 Salix purpurea SapurV1A.0073s0400 I 0.000
SELMODRAFT_451330 Selaginella moellendorffii SELMODRAFT_451330 I 0.000
SELMODRAFT_173274 Selaginella moellendorffii SELMODRAFT_173274 I 0.000
Solyc08g061130.2 Solanum lycopersicum Solyc08g061130.2 I 0.000
PGSC0003DMG401020784 Solanum tuberosum PGSC0003DMG401020784 I 0.000
Traes_6BS_993CBD840 Triticum aestivum Traes_6BS_993CBD840 I 0.000
HY5 Vitis vinifera VIT_04s0008g05210 I 0.000
HYH Vitis vinifera VIT_05s0020g01090 N 0.000