CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HY5
(
Arabidopsis thaliana
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
AT5G11260
T056924_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HY5
M06790_2.00
Arabidopsis thaliana
DNHGVTGACGTSDMN
NKHSACGTCABCDNH
Dap-seq
OMalley et al.(2016)
HY5_colamp_v3a
(Direct)
(Direct)
HY5
M08407_2.00
Arabidopsis thaliana
NNHGMCACGTGKCDNN
NNHGMCACGTGKCDNN
ChIP-chip
Mathelier et al.(2014)
MA0551.1
(Direct)
(Direct)
HY5
M09919_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HY5_01
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q39895_SOYBN
M10048_2.00
Glycine max
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$STF1_01
0.857
0.875
Q39895_SOYBN
M10049_2.00
Glycine max
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$STF1_02
0.831
0.841
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G11260.1
bZIP
86
150
EKENKRLKRLLRNRVSAQQARERKKAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILKN
AT5G11260.2
bZIP
86
148
EKENKRLKRLLRNRVSAQQARERKKAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHVR
Links
Other
bZIP
family TFs
Other
Arabidopsis thaliana
TFs
104 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10014851m.g
Eutrema salsugineum
Thhalv10014851m.g
I
0.861
PGSC0003DMG401020784
Solanum tuberosum
PGSC0003DMG401020784
I
0.857
evm.TU.supercontig_115.9
Carica papaya
evm.TU.supercontig_115.9
I
0.857
POPTR_0006s26800
Populus trichocarpa
POPTR_0006s26800
I
0.857
Eucgr.C02802
Eucalyptus grandis
Eucgr.C02802
I
0.857
POPTR_0018s01530
Populus trichocarpa
POPTR_0018s01530
I
0.857
OS02G0203000
Oryza sativa
OS02G0203000
I
0.857
gene11666-v1.0-hybrid
Fragaria vesca
gene11666-v1.0-hybrid
I
0.857
Lus10002900.g
Linum usitatissimum
Lus10002900.g
I
0.857
MDP0000264514
Malus domestica
MDP0000264514
I
0.857
29848.m004650
Ricinus communis
29848.m004650
I
0.857
OPUNC02G07060
Oryza punctata
OPUNC02G07060
I
0.857
ORGLA02G0074000
Oryza glaberrima
ORGLA02G0074000
I
0.857
PRUPE_ppa012064mg
Prunus persica
PRUPE_ppa012064mg
I
0.857
HY5
Arabidopsis lyrata
scaffold_601144.1
I
0.857
Ca_21380
Cicer arietinum
Ca_21380
I
0.857
HY5
Vitis vinifera
VIT_04s0008g05210
I
0.857
Cucsa.162360
Cucumis sativus
Cucsa.162360
I
0.857
Cla022656
Citrullus lanatus
Cla022656
I
0.857
cassava8163.valid.m1
Manihot esculenta
cassava8163.valid.m1
I
0.857
Traes_6BS_993CBD840
Triticum aestivum
Traes_6BS_993CBD840
I
0.857
Solyc08g061130.2
Solanum lycopersicum
Solyc08g061130.2
I
0.857
Ciclev10009720m.g
Citrus clementina
Ciclev10009720m.g
I
0.857
MDP0000586302
Malus domestica
MDP0000586302
I
0.857
Cagra.7526s0027
Capsella grandiflora
Cagra.7526s0027
I
0.857
Bostr.23997s0021
Boechera stricta
Bostr.23997s0021
I
0.857
Aquca_001_00822
Aquilegia coerulea
Aquca_001_00822
I
0.857
Q39895_SOYBN
Glycine max
Q39895_SOYBN
D
0.857
ONIVA02G09400
Oryza nivara
ONIVA02G09400
I
0.857
OGLUM02G07920
Oryza glumaepatula
OGLUM02G07920
I
0.857
GSMUA_Achr10G27050_001
Musa acuminata
GSMUA_Achr10G27050_001
I
0.857
Thhalv10004860m.g
Eutrema salsugineum
Thhalv10004860m.g
I
0.857
GLYMA18G14750
Glycine max
GLYMA18G14750
I
0.857
GLYMA08G41450
Glycine max
GLYMA08G41450
I
0.857
PK17235.1
Cannabis sativa
PK17235.1
I
0.857
BRADI3G07540
Brachypodium distachyon
BRADI3G07540
I
0.857
MTR_3g436010
Medicago truncatula
MTR_3g436010
I
0.857
GSMUA_Achr5G06060_001
Musa acuminata
GSMUA_Achr5G06060_001
I
0.857
orange1.1g030957m.g
Citrus sinensis
orange1.1g030957m.g
I
0.857
OB02G17160
Oryza brachyantha
OB02G17160
I
0.857
BGIOSGA006916
Oryza indica
BGIOSGA006916
I
0.857
GSMUA_Achr7G09980_001
Musa acuminata
GSMUA_Achr7G09980_001
I
0.854
SapurV1A.0073s0400
Salix purpurea
SapurV1A.0073s0400
I
0.854
Bo2g010330
Brassica oleracea
Bo2g010330
I
0.850
Bra023317
Brassica rapa
Bra023317
I
0.850
mgf014305m
Mimulus guttatus
mgf014305m
I
0.850
Bo9g171430
Brassica oleracea
Bo9g171430
I
0.850
Bra008976
Brassica rapa
Bra008976
I
0.850
e_gw1.80.85.1
Physcomitrella patens
e_gw1.80.85.1
I
0.850
Pavir.Aa02966
Panicum virgatum
Pavir.Aa02966
I
0.848
Si018524m.g
Setaria italica
Si018524m.g
I
0.848
GRMZM2G137046
Zea mays
GRMZM2G137046
I
0.848
Sb04g007060
Sorghum bicolor
Sb04g007060
I
0.848
chr6.LjT14A08.90.nd
Lotus japonicus
chr6.LjT14A08.90.nd
I
0.845
mgf012104m
Mimulus guttatus
mgf012104m
I
0.845
Gorai.004G274100
Gossypium raimondii
Gorai.004G274100
I
0.845
TCM_038392
Theobroma cacao
TCM_038392
I
0.845
LjB12O06.40.nc
Lotus japonicus
LjB12O06.40.nc
I
0.845
Cucsa.310450
Cucumis sativus
Cucsa.310450
I
0.839
Sb10g023420
Sorghum bicolor
Sb10g023420
I
0.839
Pavir.Da00549
Panicum virgatum
Pavir.Da00549
I
0.839
GRMZM2G140355
Zea mays
GRMZM2G140355
I
0.839
Pavir.Db01231
Panicum virgatum
Pavir.Db01231
I
0.839
SapurV1A.0043s0530
Salix purpurea
SapurV1A.0043s0530
I
0.839
GSMUA_Achr9G28570_001
Musa acuminata
GSMUA_Achr9G28570_001
I
0.838
Lus10002028.g
Linum usitatissimum
Lus10002028.g
I
0.838
Cla021273
Citrullus lanatus
Cla021273
I
0.836
SELMODRAFT_451326
Selaginella moellendorffii
SELMODRAFT_451326
I
0.833
SELMODRAFT_173274
Selaginella moellendorffii
SELMODRAFT_173274
I
0.833
SELMODRAFT_440988
Selaginella moellendorffii
SELMODRAFT_440988
I
0.833
SELMODRAFT_451330
Selaginella moellendorffii
SELMODRAFT_451330
I
0.833
Carubv10003520m.g
Capsella rubella
Carubv10003520m.g
I
0.830
EuGene.0200010492
Micromonas sp RCC299
EuGene.0200010492
I
0.829
BRADI1G36750
Brachypodium distachyon
BRADI1G36750
I
0.828
OBART02G07840
Oryza barthii
OBART02G07840
I
0.826
ORUFI03G26360
Oryza rufipogon
ORUFI03G26360
I
0.826
OMERI06G20830
Oryza meridionalis
OMERI06G20830
I
0.824
OBART06G20230
Oryza barthii
OBART06G20230
I
0.824
BGIOSGA023213
Oryza indica
BGIOSGA023213
I
0.824
OPUNC06G18440
Oryza punctata
OPUNC06G18440
I
0.824
OGLUM06G21280
Oryza glumaepatula
OGLUM06G21280
I
0.824
SapurV1A.3812s0010
Salix purpurea
SapurV1A.3812s0010
I
0.823
SAR_estExt_Genewise1Plus.C_20674
Micromonas pusilla
SAR_estExt_Genewise1Plus.C_20674
I
0.819
Traes_7DL_68B814464
Triticum aestivum
Traes_7DL_68B814464
I
0.818
Bostr.29827s0269
Boechera stricta
Bostr.29827s0269
I
0.818
LPERR02G06800
Leersia perrieri
LPERR02G06800
I
0.811
LPERR06G16860
Leersia perrieri
LPERR06G16860
I
0.811
F775_05429
Aegilops tauschii
F775_05429
I
0.811
GSMUA_Achr6G05280_001
Musa acuminata
GSMUA_Achr6G05280_001
I
0.811
Traes_6AS_AFF47E71C
Triticum aestivum
Traes_6AS_AFF47E71C
I
0.811
OLONG_023968
Oryza longistaminata
OLONG_023968
I
0.811
TRIUR3_25965
Triticum urartu
TRIUR3_25965
I
0.796
Traes_6DS_F8DFD036F
Triticum aestivum
Traes_6DS_F8DFD036F
I
0.796
BGIOSGA002286
Oryza indica
BGIOSGA002286
I
0.796
Ca_22618
Cicer arietinum
Ca_22618
I
0.795
MTR_7g057160
Medicago truncatula
MTR_7g057160
I
0.791
Eucgr.B02198
Eucalyptus grandis
Eucgr.B02198
I
0.790
Pavir.Ab00856
Panicum virgatum
Pavir.Ab00856
I
0.789
OS06G0601500
Oryza sativa
OS06G0601500
I
0.788
OBART06G20240
Oryza barthii
OBART06G20240
I
0.788
OLONG_013539
Oryza longistaminata
OLONG_013539
I
0.788
PRUPE_ppa011967mg
Prunus persica
PRUPE_ppa011967mg
I
0.787
Pm007163
Prunus mume
Pm007163
I
0.787