Pavir.Da00549 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Da00549 T072357_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HY5
M06790_2.00 		Arabidopsis thaliana
DNHGVTGACGTSDMN
NKHSACGTCABCDNH		 Dap-seq
OMalley et al.(2016)
HY5_colamp_v3a 		0.839 0.891
HY5
M08407_2.00 		Arabidopsis thaliana
NNHGMCACGTGKCDNN
NNHGMCACGTGKCDNN		 ChIP-chip
Mathelier et al.(2014)
MA0551.1 		0.839 0.891
HY5
M09919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HY5_01 		0.839 0.891
Q39895_SOYBN
M10048_2.00 		Glycine max Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$STF1_01 		0.839 0.891
Q39895_SOYBN
M10049_2.00 		Glycine max Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$STF1_02 		0.839 0.891
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00549.1.p bZIP 86 149

Links

Other bZIP family TFs
Other Panicum virgatum TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G140355 Zea mays GRMZM2G140355 I 0.857
Sb10g023420 Sorghum bicolor Sb10g023420 I 0.857
Pavir.Db01231 Panicum virgatum Pavir.Db01231 I 0.857
Bo2g010330 Brassica oleracea Bo2g010330 I 0.847
Bo9g171430 Brassica oleracea Bo9g171430 I 0.847
Bra008976 Brassica rapa Bra008976 I 0.847
Bra023317 Brassica rapa Bra023317 I 0.847
BRADI1G36750 Brachypodium distachyon BRADI1G36750 I 0.846
HY5 Arabidopsis thaliana AT5G11260 D 0.839
BGIOSGA006916 Oryza indica BGIOSGA006916 I 0.839
BRADI3G07540 Brachypodium distachyon BRADI3G07540 I 0.839
GLYMA08G41450 Glycine max GLYMA08G41450 I 0.839
GLYMA18G14750 Glycine max GLYMA18G14750 I 0.839
GSMUA_Achr10G27050_001 Musa acuminata GSMUA_Achr10G27050_001 I 0.839
GSMUA_Achr5G06060_001 Musa acuminata GSMUA_Achr5G06060_001 I 0.839
MTR_3g436010 Medicago truncatula MTR_3g436010 I 0.839
OB02G17160 Oryza brachyantha OB02G17160 I 0.839
OGLUM02G07920 Oryza glumaepatula OGLUM02G07920 I 0.839
ONIVA02G09400 Oryza nivara ONIVA02G09400 I 0.839
OPUNC02G07060 Oryza punctata OPUNC02G07060 I 0.839
ORGLA02G0074000 Oryza glaberrima ORGLA02G0074000 I 0.839
OS02G0203000 Oryza sativa OS02G0203000 I 0.839
PGSC0003DMG401020784 Solanum tuberosum PGSC0003DMG401020784 I 0.839
POPTR_0006s26800 Populus trichocarpa POPTR_0006s26800 I 0.839
POPTR_0018s01530 Populus trichocarpa POPTR_0018s01530 I 0.839
PRUPE_ppa012064mg Prunus persica PRUPE_ppa012064mg I 0.839
Q39895_SOYBN Glycine max Q39895_SOYBN D 0.839
HY5 Arabidopsis lyrata scaffold_601144.1 I 0.839
Solyc08g061130.2 Solanum lycopersicum Solyc08g061130.2 I 0.839
Traes_6BS_993CBD840 Triticum aestivum Traes_6BS_993CBD840 I 0.839
HY5 Vitis vinifera VIT_04s0008g05210 I 0.839
Ca_21380 Cicer arietinum Ca_21380 I 0.839
Cla022656 Citrullus lanatus Cla022656 I 0.839
29848.m004650 Ricinus communis 29848.m004650 I 0.839
cassava8163.valid.m1 Manihot esculenta cassava8163.valid.m1 I 0.839
Cucsa.162360 Cucumis sativus Cucsa.162360 I 0.839
Aquca_001_00822 Aquilegia coerulea Aquca_001_00822 I 0.839
Bostr.23997s0021 Boechera stricta Bostr.23997s0021 I 0.839
Cagra.7526s0027 Capsella grandiflora Cagra.7526s0027 I 0.839
Ciclev10009720m.g Citrus clementina Ciclev10009720m.g I 0.839
Eucgr.C02802 Eucalyptus grandis Eucgr.C02802 I 0.839
evm.TU.supercontig_115.9 Carica papaya evm.TU.supercontig_115.9 I 0.839
gene11666-v1.0-hybrid Fragaria vesca gene11666-v1.0-hybrid I 0.839
Lus10002900.g Linum usitatissimum Lus10002900.g I 0.839
MDP0000264514 Malus domestica MDP0000264514 I 0.839
MDP0000586302 Malus domestica MDP0000586302 I 0.839
orange1.1g030957m.g Citrus sinensis orange1.1g030957m.g I 0.839
Thhalv10004860m.g Eutrema salsugineum Thhalv10004860m.g I 0.839
Thhalv10014851m.g Eutrema salsugineum Thhalv10014851m.g I 0.839
PK17235.1 Cannabis sativa PK17235.1 I 0.839
GSMUA_Achr7G09980_001 Musa acuminata GSMUA_Achr7G09980_001 I 0.836
Traes_7DL_68B814464 Triticum aestivum Traes_7DL_68B814464 I 0.836
SapurV1A.0073s0400 Salix purpurea SapurV1A.0073s0400 I 0.836
GSMUA_Achr9G28570_001 Musa acuminata GSMUA_Achr9G28570_001 I 0.835
chr6.LjT14A08.90.nd Lotus japonicus chr6.LjT14A08.90.nd I 0.834
LjB12O06.40.nc Lotus japonicus LjB12O06.40.nc I 0.834
BGIOSGA023213 Oryza indica BGIOSGA023213 I 0.832
OBART06G20230 Oryza barthii OBART06G20230 I 0.832
OGLUM06G21280 Oryza glumaepatula OGLUM06G21280 I 0.832
OMERI06G20830 Oryza meridionalis OMERI06G20830 I 0.832
OPUNC06G18440 Oryza punctata OPUNC06G18440 I 0.832
mgf012104m Mimulus guttatus mgf012104m I 0.832
mgf014305m Mimulus guttatus mgf014305m I 0.832
GRMZM2G137046 Zea mays GRMZM2G137046 I 0.830
Sb04g007060 Sorghum bicolor Sb04g007060 I 0.830
SELMODRAFT_173274 Selaginella moellendorffii SELMODRAFT_173274 I 0.830
SELMODRAFT_440988 Selaginella moellendorffii SELMODRAFT_440988 I 0.830
SELMODRAFT_451326 Selaginella moellendorffii SELMODRAFT_451326 I 0.830
SELMODRAFT_451330 Selaginella moellendorffii SELMODRAFT_451330 I 0.830
Si018524m.g Setaria italica Si018524m.g I 0.830
Pavir.Aa02966 Panicum virgatum Pavir.Aa02966 I 0.830
TCM_038392 Theobroma cacao TCM_038392 I 0.827
Gorai.004G274100 Gossypium raimondii Gorai.004G274100 I 0.827
Cucsa.310450 Cucumis sativus Cucsa.310450 I 0.821
SapurV1A.0043s0530 Salix purpurea SapurV1A.0043s0530 I 0.821
LPERR06G16860 Leersia perrieri LPERR06G16860 I 0.819
GSMUA_Achr6G05280_001 Musa acuminata GSMUA_Achr6G05280_001 I 0.818
e_gw1.80.85.1 Physcomitrella patens e_gw1.80.85.1 I 0.817
Lus10002028.g Linum usitatissimum Lus10002028.g I 0.817
Carubv10003520m.g Capsella rubella Carubv10003520m.g I 0.811
EuGene.0200010492 Micromonas sp RCC299 EuGene.0200010492 I 0.811
Bostr.29827s0269 Boechera stricta Bostr.29827s0269 I 0.808
Cla021273 Citrullus lanatus Cla021273 I 0.805
BGIOSGA002286 Oryza indica BGIOSGA002286 I 0.804
OBART02G07840 Oryza barthii OBART02G07840 I 0.804
ORUFI03G26360 Oryza rufipogon ORUFI03G26360 I 0.804
F775_05429 Aegilops tauschii F775_05429 I 0.803
LPERR02G06800 Leersia perrieri LPERR02G06800 I 0.803
OLONG_023968 Oryza longistaminata OLONG_023968 I 0.803
Traes_6AS_AFF47E71C Triticum aestivum Traes_6AS_AFF47E71C I 0.803
TRIUR3_25965 Triticum urartu TRIUR3_25965 I 0.803
SapurV1A.3812s0010 Salix purpurea SapurV1A.3812s0010 I 0.802
SAR_estExt_Genewise1Plus.C_20674 Micromonas pusilla SAR_estExt_Genewise1Plus.C_20674 I 0.801
MDP0000279891 Malus domestica MDP0000279891 N 0.800
Ca_22618 Cicer arietinum Ca_22618 I 0.798
PRUPE_ppa011967mg Prunus persica PRUPE_ppa011967mg I 0.795
Pm007163 Prunus mume Pm007163 I 0.795
MTR_7g057160 Medicago truncatula MTR_7g057160 I 0.794
gene22776-v1.0-hybrid Fragaria vesca gene22776-v1.0-hybrid N 0.791
Pavir.Ab00856 Panicum virgatum Pavir.Ab00856 I 0.789
Traes_6DS_F8DFD036F Triticum aestivum Traes_6DS_F8DFD036F I 0.788
MDP0000834642 Malus domestica MDP0000834642 I 0.788
29889.m003420 Ricinus communis 29889.m003420 I 0.787
OBART06G20240 Oryza barthii OBART06G20240 I 0.785
OLONG_013539 Oryza longistaminata OLONG_013539 I 0.785
OS06G0601500 Oryza sativa OS06G0601500 I 0.785
SapurV1A.0264s0450 Salix purpurea SapurV1A.0264s0450 I 0.784
SapurV1A.1258s0140 Salix purpurea SapurV1A.1258s0140 I 0.784
SapurV1A.2641s0040 Salix purpurea SapurV1A.2641s0040 I 0.784