Pavir.Aa02966 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Aa02966 T072298_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q39895_SOYBN
M10048_2.00 		Glycine max Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$STF1_01 		0.848 0.891
Q39895_SOYBN
M10049_2.00 		Glycine max Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$STF1_02 		0.848 0.891
HY5
M06790_2.00 		Arabidopsis thaliana
DNHGVTGACGTSDMN
NKHSACGTCABCDNH		 Dap-seq
OMalley et al.(2016)
HY5_colamp_v3a 		0.848 0.844
HY5
M08407_2.00 		Arabidopsis thaliana
NNHGMCACGTGKCDNN
NNHGMCACGTGKCDNN		 ChIP-chip
Mathelier et al.(2014)
MA0551.1 		0.848 0.844
HY5
M09919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HY5_01 		0.848 0.844
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa02966.1.p bZIP 86 149

Links

Other bZIP family TFs
Other Panicum virgatum TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HY5 Arabidopsis thaliana AT5G11260 D 0.848
BGIOSGA006916 Oryza indica BGIOSGA006916 I 0.848
BRADI3G07540 Brachypodium distachyon BRADI3G07540 I 0.848
GLYMA08G41450 Glycine max GLYMA08G41450 I 0.848
GLYMA18G14750 Glycine max GLYMA18G14750 I 0.848
GSMUA_Achr10G27050_001 Musa acuminata GSMUA_Achr10G27050_001 I 0.848
GSMUA_Achr5G06060_001 Musa acuminata GSMUA_Achr5G06060_001 I 0.848
MTR_3g436010 Medicago truncatula MTR_3g436010 I 0.848
OB02G17160 Oryza brachyantha OB02G17160 I 0.848
OGLUM02G07920 Oryza glumaepatula OGLUM02G07920 I 0.848
ONIVA02G09400 Oryza nivara ONIVA02G09400 I 0.848
OPUNC02G07060 Oryza punctata OPUNC02G07060 I 0.848
ORGLA02G0074000 Oryza glaberrima ORGLA02G0074000 I 0.848
OS02G0203000 Oryza sativa OS02G0203000 I 0.848
PGSC0003DMG401020784 Solanum tuberosum PGSC0003DMG401020784 I 0.848
POPTR_0006s26800 Populus trichocarpa POPTR_0006s26800 I 0.848
POPTR_0018s01530 Populus trichocarpa POPTR_0018s01530 I 0.848
PRUPE_ppa012064mg Prunus persica PRUPE_ppa012064mg I 0.848
Q39895_SOYBN Glycine max Q39895_SOYBN D 0.848
HY5 Arabidopsis lyrata scaffold_601144.1 I 0.848
Solyc08g061130.2 Solanum lycopersicum Solyc08g061130.2 I 0.848
Traes_6BS_993CBD840 Triticum aestivum Traes_6BS_993CBD840 I 0.848
HY5 Vitis vinifera VIT_04s0008g05210 I 0.848
Ca_21380 Cicer arietinum Ca_21380 I 0.848
Cla022656 Citrullus lanatus Cla022656 I 0.848
29848.m004650 Ricinus communis 29848.m004650 I 0.848
cassava8163.valid.m1 Manihot esculenta cassava8163.valid.m1 I 0.848
Cucsa.162360 Cucumis sativus Cucsa.162360 I 0.848
Aquca_001_00822 Aquilegia coerulea Aquca_001_00822 I 0.848
Bostr.23997s0021 Boechera stricta Bostr.23997s0021 I 0.848
Cagra.7526s0027 Capsella grandiflora Cagra.7526s0027 I 0.848
Ciclev10009720m.g Citrus clementina Ciclev10009720m.g I 0.848
Eucgr.C02802 Eucalyptus grandis Eucgr.C02802 I 0.848
evm.TU.supercontig_115.9 Carica papaya evm.TU.supercontig_115.9 I 0.848
gene11666-v1.0-hybrid Fragaria vesca gene11666-v1.0-hybrid I 0.848
Lus10002900.g Linum usitatissimum Lus10002900.g I 0.848
MDP0000264514 Malus domestica MDP0000264514 I 0.848
MDP0000586302 Malus domestica MDP0000586302 I 0.848
orange1.1g030957m.g Citrus sinensis orange1.1g030957m.g I 0.848
Thhalv10004860m.g Eutrema salsugineum Thhalv10004860m.g I 0.848
Thhalv10014851m.g Eutrema salsugineum Thhalv10014851m.g I 0.848
PK17235.1 Cannabis sativa PK17235.1 I 0.848
GSMUA_Achr7G09980_001 Musa acuminata GSMUA_Achr7G09980_001 I 0.844
SapurV1A.0073s0400 Salix purpurea SapurV1A.0073s0400 I 0.844
GRMZM2G137046 Zea mays GRMZM2G137046 I 0.843
Sb04g007060 Sorghum bicolor Sb04g007060 I 0.843
Si018524m.g Setaria italica Si018524m.g I 0.843
mgf014305m Mimulus guttatus mgf014305m I 0.841
Bo2g010330 Brassica oleracea Bo2g010330 I 0.840
Bo9g171430 Brassica oleracea Bo9g171430 I 0.840
Bra008976 Brassica rapa Bra008976 I 0.840
Bra023317 Brassica rapa Bra023317 I 0.840
TCM_038392 Theobroma cacao TCM_038392 I 0.836
Gorai.004G274100 Gossypium raimondii Gorai.004G274100 I 0.836
mgf012104m Mimulus guttatus mgf012104m I 0.835
chr6.LjT14A08.90.nd Lotus japonicus chr6.LjT14A08.90.nd I 0.835
LjB12O06.40.nc Lotus japonicus LjB12O06.40.nc I 0.835
GRMZM2G140355 Zea mays GRMZM2G140355 I 0.830
Sb10g023420 Sorghum bicolor Sb10g023420 I 0.830
Cucsa.310450 Cucumis sativus Cucsa.310450 I 0.830
Pavir.Da00549 Panicum virgatum Pavir.Da00549 I 0.830
Pavir.Db01231 Panicum virgatum Pavir.Db01231 I 0.830
SapurV1A.0043s0530 Salix purpurea SapurV1A.0043s0530 I 0.830
GSMUA_Achr9G28570_001 Musa acuminata GSMUA_Achr9G28570_001 I 0.829
Lus10002028.g Linum usitatissimum Lus10002028.g I 0.825
SELMODRAFT_173274 Selaginella moellendorffii SELMODRAFT_173274 I 0.824
SELMODRAFT_440988 Selaginella moellendorffii SELMODRAFT_440988 I 0.824
SELMODRAFT_451326 Selaginella moellendorffii SELMODRAFT_451326 I 0.824
SELMODRAFT_451330 Selaginella moellendorffii SELMODRAFT_451330 I 0.824
Carubv10003520m.g Capsella rubella Carubv10003520m.g I 0.820
EuGene.0200010492 Micromonas sp RCC299 EuGene.0200010492 I 0.820
BRADI1G36750 Brachypodium distachyon BRADI1G36750 I 0.819
BGIOSGA023213 Oryza indica BGIOSGA023213 I 0.815
OBART06G20230 Oryza barthii OBART06G20230 I 0.815
OGLUM06G21280 Oryza glumaepatula OGLUM06G21280 I 0.815
OMERI06G20830 Oryza meridionalis OMERI06G20830 I 0.815
OPUNC06G18440 Oryza punctata OPUNC06G18440 I 0.815
OBART02G07840 Oryza barthii OBART02G07840 I 0.813
ORUFI03G26360 Oryza rufipogon ORUFI03G26360 I 0.813
SapurV1A.3812s0010 Salix purpurea SapurV1A.3812s0010 I 0.811
e_gw1.80.85.1 Physcomitrella patens e_gw1.80.85.1 I 0.810
SAR_estExt_Genewise1Plus.C_20674 Micromonas pusilla SAR_estExt_Genewise1Plus.C_20674 I 0.810
Bostr.29827s0269 Boechera stricta Bostr.29827s0269 I 0.809
Traes_7DL_68B814464 Triticum aestivum Traes_7DL_68B814464 I 0.808
LPERR06G16860 Leersia perrieri LPERR06G16860 I 0.802
F775_05429 Aegilops tauschii F775_05429 I 0.801
GSMUA_Achr6G05280_001 Musa acuminata GSMUA_Achr6G05280_001 I 0.801
LPERR02G06800 Leersia perrieri LPERR02G06800 I 0.801
OLONG_023968 Oryza longistaminata OLONG_023968 I 0.801
Traes_6AS_AFF47E71C Triticum aestivum Traes_6AS_AFF47E71C I 0.801
Cla021273 Citrullus lanatus Cla021273 I 0.799
BGIOSGA002286 Oryza indica BGIOSGA002286 I 0.787
TRIUR3_25965 Triticum urartu TRIUR3_25965 I 0.787
Traes_6DS_F8DFD036F Triticum aestivum Traes_6DS_F8DFD036F I 0.786
Ca_22618 Cicer arietinum Ca_22618 I 0.786
Pavir.Ab00856 Panicum virgatum Pavir.Ab00856 I 0.784