MTR_8g099305 (Medicago truncatula)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 MTR_8g099305 T331388_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.417 0.626
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.417 0.626
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH21200 Sox 150 216
KEH21200 Sox 266 332
KEH21200 Sox 395 463

Links

Other Sox family TFs
Other Medicago truncatula TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.417
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.447
HMGB6 Arabidopsis thaliana AT4G23800 I 0.448
HMGB13 Arabidopsis thaliana AT4G11080 D 0.417
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.440
PK10992.1 Cannabis sativa PK10992.1 I 0.441
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.437
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.430
Ca_05811 Cicer arietinum Ca_05811 I 0.543
Cla011101 Citrullus lanatus Cla011101 I 0.477
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.429
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.475
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.479
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.489
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.431
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.515
MDP0000268093 Malus domestica MDP0000268093 I 0.443
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.418
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.432
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.418
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.477
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.429
Pm024077 Prunus mume Pm024077 I 0.439
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.439
30190.m010807 Ricinus communis 30190.m010807 I 0.458
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.466
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.443
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.441
TCM_016416 Theobroma cacao TCM_016416 I 0.466
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.499