CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Alligator_sinensis_CCG005706.1 *(Alligator sinensis)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00505 (HMG_box)	IPR000910	Alligator_sinensis_CCG005706.1	T333560_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Sox3 M00827_2.00	Mus musculus	WDTVHNNN	NNNDBAHW	PBM Weirauch et al.(2013) pTH3087	0.666	0.969
Sox3 M03538_2.00	Mus musculus	RAACAATRNYATTGTTK	MAACAATRNYATTGTTY	SELEX Jolma et al.(2013) Sox3_1	0.666	0.969
Sox3 M03539_2.00	Mus musculus	BATCAATGBYATTGATD	HATCAATRVCATTGATV	SELEX Jolma et al.(2013) Sox3_2	0.666	0.969
Sox3 M03540_2.00	Mus musculus	DATGAATKNYATTCATR	YATGAATRNMATTCATH	SELEX Jolma et al.(2013) Sox3_3	0.666	0.969
SOX3 M05769_2.00	Homo sapiens	VYATTKTNVS	SBNAMAATRB	SELEX Yin et al.(2017) SOX3_FL_HT-SELEX	0.666	0.969
Sox3 M08168_2.00	Mus musculus	CCTTTGTYYB	VRRACAAAGG	ChIP-seq Mathelier et al.(2014) MA0514.1	0.666	0.969
SOX3 M09391_2.00	Homo sapiens	BYCWTTGTBYB	VRVACAAWGRV	Misc Kulakovskiy et al.(2013) SOX3_HUMAN.H11MO.0.B	0.666	0.969
Sox3 M09405_2.00	Mus musculus	VRVACAAWGGV	BCCWTTGTBYB	Misc Kulakovskiy et al.(2013) SOX3_MOUSE.H11MO.0.C	0.666	0.969
Sox3 M09639_2.00	Mus musculus	VACAAWRG	CYWTTGTB	Misc Heinz et al.(2010) NPC-Sox3_GSE33059	0.666	0.969
SOX3 M05770_2.00	Homo sapiens	BYATTGTBNN	NNVACAATRV	SELEX Yin et al.(2017) SOX3_FL_Methyl-HT-SELEX	0.666	0.969
SoxN M03976_2.00	Drosophila melanogaster	VYGHACARTNN	NNAYTGTDCRB	SELEX Nitta et al.(2015) SoxN_1	0.658	0.892
SoxN M03977_2.00	Drosophila melanogaster	NCAATNVCATTGN	NCAATGBNATTGN	SELEX Nitta et al.(2015) SoxN_2	0.658	0.892
Sox14 M00829_2.00	Mus musculus	NAACAATD	HATTGTTN	PBM Weirauch et al.(2013) pTH2677	0.636	0.923
Sox14 M00206_2.00	Mus musculus	NNNABAAW	WTTVTNNN	PBM Badis et al.(2009) Sox14_2677	0.636	0.923
SOX14 M03513_2.00	Homo sapiens	ACAMTAMCATTG	CAATGKTAKTGT	SELEX Jolma et al.(2013) SOX14_1	0.636	0.923
SOX14 M03514_2.00	Homo sapiens	NTGAATANCATTCAN	NTGAATGNTATTCAN	SELEX Jolma et al.(2013) SOX14_2	0.636	0.923
SOX14 M03515_2.00	Homo sapiens	TCAATWVCATTGA	TCAATGBWATTGA	SELEX Jolma et al.(2013) SOX14_3	0.636	0.923
SOX2 M03519_2.00	Homo sapiens	DAACAATGKYAKTGTTN	NAACAMTRMCATTGTTH	SELEX Jolma et al.(2013) SOX2_1	0.636	0.923
SOX2 M03520_2.00	Homo sapiens	VTGAATGDYATTCAN	NTGAATRHCATTCAB	SELEX Jolma et al.(2013) SOX2_2	0.636	0.923
SOX2 M03521_2.00	Homo sapiens	NATCAATGNYATTGAWD	HWTCAATRNCATTGATN	SELEX Jolma et al.(2013) SOX2_3	0.636	0.923
SOX2 M03522_2.00	Homo sapiens	NAACAATANCATTGTTH	DAACAATGNTATTGTTN	SELEX Jolma et al.(2013) SOX2_4	0.636	0.923
SOX2 M03523_2.00	Homo sapiens	HATCAATANCATTGATH	DATCAATGNTATTGATD	SELEX Jolma et al.(2013) SOX2_5	0.636	0.923
SOX2 M03524_2.00	Homo sapiens	DTGAATWNCATTCAH	DTGAATGNWATTCAH	SELEX Jolma et al.(2013) SOX2_6	0.636	0.923
SOX14 M05783_2.00	Homo sapiens	NYATTGWNNN	NNNWCAATRN	SELEX Yin et al.(2017) SOX14_eDBD_HT-SELEX	0.636	0.923
SOX14 M05785_2.00	Homo sapiens	NCGAACAATK	MATTGTTCGN	SELEX Yin et al.(2017) SOX14_FL_HT-SELEX	0.636	0.923
SOX2 M05897_2.00	Homo sapiens	NACAAWRRNN	NNYYWTTGTN	SMiLE-seq Isakova et al.(2017) SOX2	0.636	0.923
Sox2 M08170_2.00	Mus musculus	CCWTTGTB	VACAAWGG	ChIP-seq Mathelier et al.(2014) MA0143.3	0.636	0.923
Sox2 M08041_2.00	Mus musculus	WHWRMADNACAAWRR	YYWTTGTNHTKYWDW	ChIP-seq Chen et al.(2011) SRP000217_Sox2	0.636	0.923
Sox2 M08042_2.00	Mus musculus	TTWRCATNWSAAWRV	BYWTTSWNATGYWAA	ChIP-seq Chen et al.(2011) SRP000712_Sox2	0.636	0.923
SOX2 M09397_2.00	Homo sapiens	BBYYWTTGTBYBB	VVRVACAAWRRVV	Misc Kulakovskiy et al.(2013) SOX2_HUMAN.H11MO.0.A	0.636	0.923
Sox2 M09409_2.00	Mus musculus	THWRCATNACAAWRRV	BYYWTTGTNATGYWDA	Misc Kulakovskiy et al.(2013) SOX2_MOUSE.H11MO.0.A	0.636	0.923
SOX2 M11327_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q3_01	0.636	0.923
SOX2 M11328_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q3	0.636	0.923
SOX2 M11329_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q4	0.636	0.923
SOX2 M11330_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q6	0.636	0.923
SOX14 M05784_2.00	Homo sapiens	NYATTGTNNN	NNNACAATRN	SELEX Yin et al.(2017) SOX14_eDBD_Methyl-HT-SELEX	0.636	0.923
SOX14 M05786_2.00	Homo sapiens	NATTGTTYGB	VCRAACAATN	SELEX Yin et al.(2017) SOX14_FL_Methyl-HT-SELEX	0.636	0.923
Sox1 M00214_2.00	Mus musculus	NNNNNWBAAW	WTTVWNNNNN	PBM Badis et al.(2009) Sox1_2631	0.636	0.908
Sox1 M03542_2.00	Mus musculus	VACAATWNCATTGTT	AACAATGNWATTGTB	SELEX Jolma et al.(2013) Sox1_1	0.636	0.908
Sox1 M03543_2.00	Mus musculus	NTGAATWNCATTCAN	NTGAATGNWATTCAN	SELEX Jolma et al.(2013) Sox1_2	0.636	0.908
Sox1 M03544_2.00	Mus musculus	TCAATWNCATTGA	TCAATGNWATTGA	SELEX Jolma et al.(2013) Sox1_3	0.636	0.908
Sox1 M03545_2.00	Mus musculus	TGAATDDNHATTCA	TGAATDNHHATTCA	SELEX Jolma et al.(2013) Sox1_4	0.636	0.908
Sox21 M00208_2.00	Mus musculus	WTTVWNNNN	NNNNWBAAW	PBM Badis et al.(2009) Sox21_3417	0.629	0.908
Sox21a M03978_2.00	Drosophila melanogaster	NMACAMTAVCATTGTKN	NMACAATGBTAKTGTKN	SELEX Nitta et al.(2015) Sox21a_1	0.624	0.877
Sox21a M03979_2.00	Drosophila melanogaster	NNACAMTANCATTGTYH	DRACAATGNTAKTGTNN	SELEX Nitta et al.(2015) Sox21a_2	0.624	0.877
SOX21 M03497_2.00	Homo sapiens	AACAATKKYAKTGTT	AACAMTRMMATTGTT	SELEX Jolma et al.(2013) SOX21_1	0.600	0.892
SOX21 M03498_2.00	Homo sapiens	AACAATRKDYAKTGTT	AACAMTRHMYATTGTT	SELEX Jolma et al.(2013) SOX21_2	0.600	0.892
SOX21 M03499_2.00	Homo sapiens	TCAATGDYAKTGA	TCAMTRHCATTGA	SELEX Jolma et al.(2013) SOX21_3	0.600	0.892
SOX21 M03500_2.00	Homo sapiens	TGAATGKYAKTCA	TGAMTRMCATTCA	SELEX Jolma et al.(2013) SOX21_4	0.600	0.892
Sox15 M00202_2.00	Mus musculus	WTTVWNNNN	NNNNWBAAW	PBM Badis et al.(2009) Sox15_3457	0.595	0.800
SOX15 M03508_2.00	Homo sapiens	AACAATAMCATTGTT	AACAATGKTATTGTT	SELEX Jolma et al.(2013) SOX15_1	0.595	0.785
SOX15 M03509_2.00	Homo sapiens	ATCAATAMCATTGAT	ATCAATGKTATTGAT	SELEX Jolma et al.(2013) SOX15_2	0.595	0.785
SOX15 M03510_2.00	Homo sapiens	ATGAATAACATTCAT	ATGAATGTTATTCAT	SELEX Jolma et al.(2013) SOX15_3	0.595	0.785
SOX15 M05893_2.00	Homo sapiens	YYWTTGTNHN	NDNACAAWRR	SMiLE-seq Isakova et al.(2017) SOX15	0.595	0.785
SOX15 M11308_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX15_Q3	0.595	0.785
Sox21b M03983_2.00	Drosophila melanogaster	NAACAMTWNCAKTGTTB	VAACAMTGNWAKTGTTN	SELEX Nitta et al.(2015) Sox21b_1	0.585	0.862
D M03969_2.00	Drosophila melanogaster	AMVGAACAAT	ATTGTTCBKT	SELEX Nitta et al.(2015) D_1	0.585	0.831
D M03970_2.00	Drosophila melanogaster	NAACAATDNCATTGTTN	NAACAATGNHATTGTTN	SELEX Nitta et al.(2015) D_2	0.585	0.831
D M06559_2.00	Drosophila melanogaster	BCYWTTGTTNT	ANAACAAWRGV	B1H Mathelier et al.(2014) MA0445.1	0.585	0.831
D M06448_2.00	Drosophila melanogaster	BCYATTGTYNW	WNRACAATRGV	B1H Zhu et al.(2011) D_NAR_FBgn0000411	0.585	0.831
D M09694_2.00	Drosophila melanogaster	RACAAWRGVH	DBCYWTTGTY	Misc Kulakovskiy et al.(2009) D	0.585	0.831
SRY M03525_2.00	Homo sapiens	AACAATANCATTGTT	AACAATGNTATTGTT	SELEX Jolma et al.(2013) SRY_1	0.558	0.662
SRY M03526_2.00	Homo sapiens	AACAATHHNCATTGTT	AACAATGNDDATTGTT	SELEX Jolma et al.(2013) SRY_2	0.558	0.662
SRY M03527_2.00	Homo sapiens	TCAATAMCATTGA	TCAATGKTATTGA	SELEX Jolma et al.(2013) SRY_3	0.558	0.662
SRY M03528_2.00	Homo sapiens	TGAATANCATTCA	TGAATGNTATTCA	SELEX Jolma et al.(2013) SRY_4	0.558	0.662
SRY M05898_2.00	Homo sapiens	NACAATNV	BNATTGTN	SMiLE-seq Isakova et al.(2017) SRY	0.558	0.662
SRY M02717_2.00	Homo sapiens	NDWAACAAW	WTTGTWWHN	SELEX Mathelier et al.(2014) MA0084.1	0.558	0.662
SRY M09398_2.00	Homo sapiens	BWTTGTTWH	DWAACAAWV	Misc Kulakovskiy et al.(2013) SRY_HUMAN.H11MO.0.B	0.558	0.662
SRY M11331_2.00	Homo sapiens	AAWSWMM	KKWSWTT	Transfac Matys et al.(2006) V$SRY_01	0.558	0.662
SRY M11332_2.00	Homo sapiens	HBHWTTGTTWDN	NHWAACAAWDVD	Transfac Matys et al.(2006) V$SRY_02	0.558	0.662
SRY M11333_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SRY_Q6	0.558	0.662
Sry M00211_2.00	Mus musculus	ATTRTNNNNN	NNNNNAYAAT	PBM Badis et al.(2009) Sry_2833	0.556	0.646
Sry M09408_2.00	Mus musculus	BWTTGTTWH	DWAACAAWV	Misc Kulakovskiy et al.(2013) SRY_MOUSE.H11MO.0.B	0.556	0.646
Sox7 M00209_2.00	Mus musculus	NNNWBAAT	ATTVWNNN	PBM Badis et al.(2009) Sox7_3460	0.542	0.554
SOX7 M03516_2.00	Homo sapiens	AACAATRDNHAKTGTT	AACAMTDNHYATTGTT	SELEX Jolma et al.(2013) SOX7_1	0.542	0.554
SOX7 M03517_2.00	Homo sapiens	DAACAATKDYAKTGTTN	NAACAMTRHMATTGTTH	SELEX Jolma et al.(2013) SOX7_2	0.542	0.554
SOX7 M03518_2.00	Homo sapiens	NATGAATKDCAKTCATN	NATGAMTGHMATTCATN	SELEX Jolma et al.(2013) SOX7_3	0.542	0.554
SOX7 M05787_2.00	Homo sapiens	ACAATDNHATTGT	ACAATDNHATTGT	SELEX Yin et al.(2017) SOX7_eDBD_HT-SELEX	0.542	0.554
SOX7 M11325_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX7_Q2	0.542	0.554
SOX7 M05788_2.00	Homo sapiens	ACAATDNHATTGT	ACAATDNHATTGT	SELEX Yin et al.(2017) SOX7_eDBD_Methyl-HT-SELEX	0.542	0.554
Sox17 M00199_2.00	Mus musculus	NNNNWSAAT	ATTSWNNNN	PBM Badis et al.(2009) Sox17_2837	0.533	0.585
Sox17 M03533_2.00	Mus musculus	AACAATWDCATTGTT	AACAATGHWATTGTT	SELEX Jolma et al.(2013) Sox17_1	0.533	0.585
Sox17 M03534_2.00	Mus musculus	ATGAATWNCATTCAT	ATGAATGNWATTCAT	SELEX Jolma et al.(2013) Sox17_2	0.533	0.585
SOX17 M05896_2.00	Homo sapiens	DRACAATRVN	NBYATTGTYH	SMiLE-seq Isakova et al.(2017) SOX17	0.533	0.585
Sox17 M02718_2.00	Mus musculus	SACAATRNN	NNYATTGTS	SELEX Mathelier et al.(2014) MA0078.1	0.533	0.585
Sox17 M08040_2.00	Mus musculus	RVACAAWRRVN	NBYYWTTGTBY	ChIP-seq Chen et al.(2011) GSE19026_Sox17_XENcells	0.533	0.585
SOX17 M09396_2.00	Homo sapiens	BCCATTKTNBN	NVNAMAATGGV	Misc Kulakovskiy et al.(2013) SOX17_HUMAN.H11MO.0.C	0.533	0.585
SOX17 M11323_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX17_01	0.533	0.585
SOX17 M11324_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX17_Q2	0.533	0.585
Sox18 M00204_2.00	Mus musculus	NNNWBAAT	ATTVWNNN	PBM Badis et al.(2009) Sox18_3506	0.533	0.554
SOX18 M03529_2.00	Homo sapiens	AACAATDNCATTGTT	AACAATGNHATTGTT	SELEX Jolma et al.(2013) SOX18_1	0.533	0.554
SOX18 M03530_2.00	Homo sapiens	ATCAATWDCATTGAT	ATCAATGHWATTGAT	SELEX Jolma et al.(2013) SOX18_2	0.533	0.554
SOX18 M03531_2.00	Homo sapiens	ATGAATWYCATTCAT	ATGAATGRWATTCAT	SELEX Jolma et al.(2013) SOX18_3	0.533	0.554
SOX18 M05791_2.00	Homo sapiens	VACRAYGV	BCRTYGTB	SELEX Yin et al.(2017) SOX18_eDBD_HT-SELEX	0.533	0.554
SOX18 M11334_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX18_Q5_01	0.533	0.554
SOX18 M11335_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX18_Q5	0.533	0.554
SOX18 M05792_2.00	Homo sapiens	BYATTGTN	NACAATRV	SELEX Yin et al.(2017) SOX18_eDBD_Methyl-HT-SELEX	0.533	0.554
Sox6 M00828_2.00	Mus musculus	WTTGTNNNN	NNNNACAAW	PBM Weirauch et al.(2013) pTH3862	0.526	0.538
SOX6 M05892_2.00	Homo sapiens	DRACAATRVN	NBYATTGTYH	SMiLE-seq Isakova et al.(2017) SOX6	0.526	0.538
Sox6 M08169_2.00	Mus musculus	BCWTTGTYYY	RRRACAAWGV	ChIP-seq Mathelier et al.(2014) MA0515.1	0.526	0.538
Sox6 M09640_2.00	Mus musculus	BHWTTGTBNN	NNVACAAWDV	Misc Heinz et al.(2010) Myotubes-Sox6_GSE32627	0.526	0.538
SOX6 M11300_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX6_Q5	0.526	0.538
Sox5 M00203_2.00	Mus musculus	ATTGTBNN	NNVACAAT	PBM Badis et al.(2009) Sox5_3459	0.519	0.538
Sox13 M00212_2.00	Mus musculus	RAACAATW	WATTGTTY	PBM Badis et al.(2009) Sox13_1718	0.519	0.538
SOX5 M05894_2.00	Homo sapiens	DVACAATRVN	NBYATTGTBH	SMiLE-seq Isakova et al.(2017) SOX5	0.519	0.538
Sox5 M02719_2.00	Mus musculus	NAACAAT	ATTGTTN	SELEX Mathelier et al.(2014) MA0087.1	0.519	0.538
SOX13 M08166_2.00	Homo sapiens	NNACAATGVNN	NNBCATTGTNN	ChIP-seq Mathelier et al.(2014) MA1120.1	0.519	0.538
SOX5 M09390_2.00	Homo sapiens	NAACAATN	NATTGTTN	Misc Kulakovskiy et al.(2013) SOX5_HUMAN.H11MO.0.C	0.519	0.538
Sox5 M09404_2.00	Mus musculus	NAACAATN	NATTGTTN	Misc Kulakovskiy et al.(2013) SOX5_MOUSE.H11MO.0.C	0.519	0.538
SOX5 M11309_2.00	Homo sapiens	NNAACAATNN	NNATTGTTNN	Transfac Matys et al.(2006) V$SOX5_01	0.519	0.538
SOX5 M11310_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX5_Q5	0.519	0.538
Sox8 M00197_2.00	Mus musculus	NNNWBAAT	ATTVWNNN	PBM Badis et al.(2009) Sox8_1733	0.519	0.600
SOX8 M03483_2.00	Homo sapiens	AACAATRTGCAGTGTT	AACACTGCAYATTGTT	SELEX Jolma et al.(2013) SOX8_1	0.519	0.600
SOX8 M03484_2.00	Homo sapiens	ATGAATTKCAGTC	GACTGMAATTCAT	SELEX Jolma et al.(2013) SOX8_2	0.519	0.600
SOX8 M03485_2.00	Homo sapiens	RAACAATTKCAGTGTTN	NAACACTGMAATTGTTY	SELEX Jolma et al.(2013) SOX8_3	0.519	0.600
SOX8 M03486_2.00	Homo sapiens	HATCAATTKCAGTGATN	NATCACTGMAATTGATD	SELEX Jolma et al.(2013) SOX8_4	0.519	0.600
SOX8 M03487_2.00	Homo sapiens	TGAATRTKCAGTCA	TGACTGMAYATTCA	SELEX Jolma et al.(2013) SOX8_5	0.519	0.600
SOX8 M03488_2.00	Homo sapiens	AACAATTDCAGTGTT	AACACTGHAATTGTT	SELEX Jolma et al.(2013) SOX8_6	0.519	0.600
SOX8 M03489_2.00	Homo sapiens	ATGAATTKCAGTC	GACTGMAATTCAT	SELEX Jolma et al.(2013) SOX8_7	0.519	0.600
SOX8 M03490_2.00	Homo sapiens	MATCAATTGCAGTGATK	MATCACTGCAATTGATK	SELEX Jolma et al.(2013) SOX8_8	0.519	0.600
SOX8 M05749_2.00	Homo sapiens	NDAACAATRV	BYATTGTTHN	SELEX Yin et al.(2017) SOX8_eDBD_HT-SELEX	0.519	0.600
SOX8 M05751_2.00	Homo sapiens	ACAATRVNNBYATTGT	ACAATRVNNBYATTGT	SELEX Yin et al.(2017) SOX8_FL_HT-SELEX	0.519	0.600
SOX8 M05750_2.00	Homo sapiens	BYATTGTTNN	NNAACAATRV	SELEX Yin et al.(2017) SOX8_eDBD_Methyl-HT-SELEX	0.519	0.600
SOX8 M05752_2.00	Homo sapiens	ACAATRVNNBYATTGT	ACAATRVNNBYATTGT	SELEX Yin et al.(2017) SOX8_FL_Methyl-HT-SELEX	0.519	0.600
Sox14 M03971_2.00	Drosophila melanogaster	BTGTWCGGTR	YACCGWACAV	SELEX Nitta et al.(2015) Sox14_1	0.516	0.585
Sox14 M03972_2.00	Drosophila melanogaster	VACAATDNCATTGTB	VACAATGNHATTGTB	SELEX Nitta et al.(2015) Sox14_2	0.516	0.585
Sox14 M06449_2.00	Drosophila melanogaster	VYYCTTTGTYC	GRACAAAGRRB	B1H Zhu et al.(2011) Sox14_SANGER_10_FBgn0005612	0.516	0.585
Sox10 M00826_2.00	Mus musculus	NNNNWBAAT	ATTVWNNNN	PBM Weirauch et al.(2013) pTH1729	0.512	0.585
SOX10 M03491_2.00	Homo sapiens	AACAATTKCAGTGTT	AACACTGMAATTGTT	SELEX Jolma et al.(2013) SOX10_1	0.512	0.585
SOX10 M03492_2.00	Homo sapiens	AACAATRTKCAGTGTT	AACACTGMAYATTGTT	SELEX Jolma et al.(2013) SOX10_2	0.512	0.585
SOX10 M03493_2.00	Homo sapiens	ATCAATTKCAGTGAT	ATCACTGMAATTGAT	SELEX Jolma et al.(2013) SOX10_3	0.512	0.585
SOX10 M03494_2.00	Homo sapiens	ATGAATTKCAGTCAT	ATGACTGMAATTCAT	SELEX Jolma et al.(2013) SOX10_4	0.512	0.585
SOX10 M03495_2.00	Homo sapiens	TGAATGTKCAGTCA	TGACTGMACATTCA	SELEX Jolma et al.(2013) SOX10_5	0.512	0.585
SOX9 M03501_2.00	Homo sapiens	DDACAATRV	BYATTGTHH	SELEX Jolma et al.(2013) SOX9_1	0.512	0.585
SOX9 M03502_2.00	Homo sapiens	AACAATRTGCAGTGTT	AACACTGCAYATTGTT	SELEX Jolma et al.(2013) SOX9_2	0.512	0.585
SOX9 M03503_2.00	Homo sapiens	ATCAATRTKCAGTGAT	ATCACTGMAYATTGAT	SELEX Jolma et al.(2013) SOX9_3	0.512	0.585
SOX9 M03504_2.00	Homo sapiens	ATGAATRTKCAGTCAT	ATGACTGMAYATTCAT	SELEX Jolma et al.(2013) SOX9_4	0.512	0.585
SOX9 M03505_2.00	Homo sapiens	RAACAATTKCAGTGTTH	DAACACTGMAATTGTTY	SELEX Jolma et al.(2013) SOX9_5	0.512	0.585
SOX9 M03506_2.00	Homo sapiens	NATCAATKKYAGTGATN	NATCACTRMMATTGATN	SELEX Jolma et al.(2013) SOX9_6	0.512	0.585
SOX9 M03507_2.00	Homo sapiens	NATGAATTKCAGTCATN	NATGACTGMAATTCATN	SELEX Jolma et al.(2013) SOX9_7	0.512	0.585
Sox10 M03535_2.00	Mus musculus	AACAATTKCAGTGTT	AACACTGMAATTGTT	SELEX Jolma et al.(2013) Sox10_1	0.512	0.585
Sox10 M03536_2.00	Mus musculus	ATCAATTKCAGTGAT	ATCACTGMAATTGAT	SELEX Jolma et al.(2013) Sox10_2	0.512	0.585
Sox10 M03537_2.00	Mus musculus	ATGAATTDCAGTCAT	ATGACTGHAATTCAT	SELEX Jolma et al.(2013) Sox10_3	0.512	0.585
SOX10 M05759_2.00	Homo sapiens	AACAATRNNNYATTGTT	AACAATRNNNYATTGTT	SELEX Yin et al.(2017) SOX10_eDBD_HT-SELEX	0.512	0.585
SOX10 M05761_2.00	Homo sapiens	NACAATRVNNBYATTGTN	NACAATRVNNBYATTGTN	SELEX Yin et al.(2017) SOX10_FL_HT-SELEX	0.512	0.585
SOX9 M05767_2.00	Homo sapiens	HDAACAATRV	BYATTGTTHD	SELEX Yin et al.(2017) SOX9_eDBD_HT-SELEX	0.512	0.585
SOX10 M05891_2.00	Homo sapiens	BBCWWTGTTH	DAACAWWGVV	SMiLE-seq Isakova et al.(2017) SOX10	0.512	0.585
SOX9 M02716_2.00	Homo sapiens	DAACAATRG	CYATTGTTH	SELEX Mathelier et al.(2014) MA0077.1	0.512	0.585
SOX10 M08165_2.00	Homo sapiens	NNVACAAAGVN	NBCTTTGTBNN	ChIP-seq Mathelier et al.(2014) MA0442.2	0.512	0.585
SOX10 M09387_2.00	Homo sapiens	VAADRVVNBCWTTGTN	NACAAWGVNBBYHTTB	Misc Kulakovskiy et al.(2013) SOX10_HUMAN.H11MO.0.B	0.512	0.585
SOX9 M09389_2.00	Homo sapiens	RMACAAWGVNNBYHTT	AADRVNNBCWTTGTKY	Misc Kulakovskiy et al.(2013) SOX9_HUMAN.H11MO.0.B	0.512	0.585
Sox10 M09403_2.00	Mus musculus	VAADRVVNBCWTTGTN	NACAAWGVNBBYHTTB	Misc Kulakovskiy et al.(2013) SOX10_MOUSE.H11MO.0.B	0.512	0.585
Sox9 M09399_2.00	Mus musculus	RMACAAWGVNNBYHTT	AADRVNNBCWTTGTKY	Misc Kulakovskiy et al.(2013) SOX9_MOUSE.H11MO.0.A	0.512	0.585
SOX10 M11296_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX10_Q3	0.512	0.585
SOX10 M11297_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX10_Q6_01	0.512	0.585
SOX10 M11298_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX10_Q6	0.512	0.585
SOX9 M11304_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX9_09	0.512	0.585
SOX9 M11305_2.00	Homo sapiens	NNNDAACAATRRNN	NNYYATTGTTHNNN	Transfac Matys et al.(2006) V$SOX9_B1	0.512	0.585
SOX9 M11306_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX9_Q4	0.512	0.585
SOX9 M11307_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX9_Q5	0.512	0.585
SOX10 M05760_2.00	Homo sapiens	AACAATRSNSYATTGTT	AACAATRSNSYATTGTT	SELEX Yin et al.(2017) SOX10_eDBD_Methyl-HT-SELEX	0.512	0.585
SOX10 M05762_2.00	Homo sapiens	NACAATRVNNBYATTGTN	NACAATRVNNBYATTGTN	SELEX Yin et al.(2017) SOX10_FL_Methyl-HT-SELEX	0.512	0.585
SOX9 M05768_2.00	Homo sapiens	NNNACAATRS	SYATTGTNNN	SELEX Yin et al.(2017) SOX9_eDBD_Methyl-HT-SELEX	0.512	0.585
SOX4 M01026_2.00	Homo sapiens	AACAAWGR	YCWTTGTT	PBM Scharer et al.(2009) Sox4	0.509	0.662
Sox11 M00210_2.00	Mus musculus	WTTGTBNNN	NNNVACAAW	PBM Badis et al.(2009) Sox11_2266	0.509	0.662
Sox4 M00213_2.00	Mus musculus	NNVACAAWD	HWTTGTBNN	PBM Badis et al.(2009) Sox4_2941	0.509	0.662
SOX4 M03496_2.00	Homo sapiens	NAACAATTKCAGTGTT	AACACTGMAATTGTTN	SELEX Jolma et al.(2013) SOX4_1	0.509	0.662
Sox11 M03541_2.00	Mus musculus	AACAATTKCAGTGTT	AACACTGMAATTGTT	SELEX Jolma et al.(2013) Sox11_1	0.509	0.662
SOX4 M05765_2.00	Homo sapiens	NRACAAWGVV	BBCWTTGTYN	SELEX Yin et al.(2017) SOX4_eDBD_HT-SELEX	0.509	0.662
SOX4 M09388_2.00	Homo sapiens	BYCTTTGTYYBB	VVRRACAAAGRV	Misc Kulakovskiy et al.(2013) SOX4_HUMAN.H11MO.0.B	0.509	0.662
Sox4 M09410_2.00	Mus musculus	BYCTTTGTYYBB	VVRRACAAAGRV	Misc Kulakovskiy et al.(2013) SOX4_MOUSE.H11MO.0.A	0.509	0.662
Sox4 M09641_2.00	Mus musculus	BCWTTGTYCN	NGRACAAWGV	Misc Heinz et al.(2010) proB-Sox4_GSE50066	0.509	0.662
SOX11 M11326_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX11_Q6	0.509	0.662
SOX4 M11301_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX4_Q3	0.509	0.662
SOX4 M11302_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX4_Q5_02	0.509	0.662
SOX4 M11303_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX4_Q5	0.509	0.662
SOX4 M05766_2.00	Homo sapiens	NRACAAWGVV	BBCWTTGTYN	SELEX Yin et al.(2017) SOX4_eDBD_Methyl-HT-SELEX	0.509	0.662
sem-2 M02488_2.00	Caenorhabditis elegans	NNNHVNNNNN	NNNNNBDNNN	PBM Weirauch et al.(2014) pTH9043	0.509	0.631
Sox12 M00205_2.00	Mus musculus	HWTTGTBNNN	NNNVACAAWD	PBM Badis et al.(2009) Sox12_3957	0.507	0.646
SOX12 M05789_2.00	Homo sapiens	NATTGTTCGGK	MCCGAACAATN	SELEX Yin et al.(2017) SOX12_eDBD_HT-SELEX	0.507	0.646
SOX12 M05790_2.00	Homo sapiens	YATTGTTCBKT	AMVGAACAATR	SELEX Yin et al.(2017) SOX12_eDBD_Methyl-HT-SELEX	0.507	0.646
Sox15 M03973_2.00	Drosophila melanogaster	WYTGTTCGGTD	HACCGAACARW	SELEX Nitta et al.(2015) Sox15_1	0.499	0.523
Sox15 M03974_2.00	Drosophila melanogaster	VACAATDNCATTGTN	NACAATGNHATTGTB	SELEX Nitta et al.(2015) Sox15_2	0.499	0.523
Sox15 M06450_2.00	Drosophila melanogaster	RWACAATR	YATTGTWY	B1H Zhu et al.(2011) Sox15_SANGER_5_FBgn0005613	0.499	0.523
egl-13 M00710_2.00	Caenorhabditis elegans	NNAACAATWN	NWATTGTTNN	PBM Narasimhan et al.(2015) pTH9125	0.483	0.538
Sox102F M03981_2.00	Drosophila melanogaster	ATTGTTCGGTGKN	NMCACCGAACAAT	SELEX Nitta et al.(2015) Sox102F_1	0.483	0.538
Sox102F M03982_2.00	Drosophila melanogaster	NAACAATDDCATTGTTN	NAACAATGHHATTGTTN	SELEX Nitta et al.(2015) Sox102F_2	0.483	0.538
Sox30 M00201_2.00	Mus musculus	ATTRTBNNNN	NNNNVAYAAT	PBM Badis et al.(2009) Sox30_2781	0.459	0.446
SOX30 M05753_2.00	Homo sapiens	NRACAATN	NATTGTYN	SELEX Yin et al.(2017) SOX30_eDBD_HT-SELEX	0.459	0.446
SOX30 M05754_2.00	Homo sapiens	BATTGTYN	NRACAATV	SELEX Yin et al.(2017) SOX30_eDBD_Methyl-HT-SELEX	0.459	0.446
ROX1 M00070_2.00	Saccharomyces cerevisiae	NRAACAATWNN	NNWATTGTTYN	PBM Badis et al.(2008) ROX1_2099	0.429	0.338
ROX1 M07498_2.00	Saccharomyces cerevisiae	YYHATTGTTYTS	SARAACAATDRR	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0371.1	0.429	0.338
ROX1 M08607_2.00	Saccharomyces cerevisiae	BYATTGTN	NACAATRV	Misc DeBoer et al.(2011) YPR065W_1396	0.429	0.338
ROX1 M11346_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$ROX1_Q6_01	0.429	0.338
ROX1 M11347_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$ROX1_Q6	0.429	0.338
For this family, TFs with SR scores > 0.415* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Alligator_sinensis_CCG005706.1	Sox	1	65	MNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLSDAEKRPFIDEAKRLRAVHMKEYPDYK

Links
Other Sox family TFs
Other *Alligator sinensis* TFs

1933 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AMTR_s00006p00259200	Amborella trichopoda	AMTR_s00006p00259200	I	0.000
Aquca_006_00040	Aquilegia coerulea	Aquca_006_00040	I	0.000
Aquca_006_00360	Aquilegia coerulea	Aquca_006_00360	I	0.000
AtbZIP3	Arabidopsis lyrata	fgenesh2_kg.6__1562__AT5G15830.1	I	0.000
ATBZIP42	Arabidopsis thaliana	AT3G30530	D	0.000
Bostr.2902s0318	Boechera stricta	Bostr.2902s0318	I	0.000
Bo2g012800	Brassica oleracea	Bo2g012800	I	0.000
Bo3g010620	Brassica oleracea	Bo3g010620	I	0.000
Bo3g010750	Brassica oleracea	Bo3g010750	I	0.000
Bo9g163740	Brassica oleracea	Bo9g163740	I	0.000
Bra008670	Brassica rapa	Bra008670	I	0.000
Bra023540	Brassica rapa	Bra023540	I	0.000
PK07533.1	Cannabis sativa	PK07533.1	I	0.000
Cagra.6845s0027	Capsella grandiflora	Cagra.6845s0027	I	0.000
Carubv10002068m.g	Capsella rubella	Carubv10002068m.g	I	0.000
evm.TU.supercontig_129.74	Carica papaya	evm.TU.supercontig_129.74	I	0.000
evm.TU.supercontig_538.1	Carica papaya	evm.TU.supercontig_538.1	I	0.000
Ca_09362	Cicer arietinum	Ca_09362	I	0.000
Ca_17416	Cicer arietinum	Ca_17416	I	0.000
Cla005975	Citrullus lanatus	Cla005975	I	0.000
Cla016748	Citrullus lanatus	Cla016748	I	0.000
Cla016841	Citrullus lanatus	Cla016841	I	0.000
Cla020641	Citrullus lanatus	Cla020641	I	0.000
Ciclev10002731m.g	Citrus clementina	Ciclev10002731m.g	N	0.000
Ciclev10013334m.g	Citrus clementina	Ciclev10013334m.g	I	0.000
Ciclev10027584m.g	Citrus clementina	Ciclev10027584m.g	I	0.000
Ciclev10029834m.g	Citrus clementina	Ciclev10029834m.g	I	0.000
Ciclev10032777m.g	Citrus clementina	Ciclev10032777m.g	I	0.000
orange1.1g029952m.g	Citrus sinensis	orange1.1g029952m.g	I	0.000
orange1.1g041765m.g	Citrus sinensis	orange1.1g041765m.g	N	0.000
orange1.1g042014m.g	Citrus sinensis	orange1.1g042014m.g	I	0.000
orange1.1g043159m.g	Citrus sinensis	orange1.1g043159m.g	I	0.000
orange1.1g044691m.g	Citrus sinensis	orange1.1g044691m.g	I	0.000
Cucsa.109420	Cucumis sativus	Cucsa.109420	I	0.000
Cucsa.174700	Cucumis sativus	Cucsa.174700	I	0.000
Cucsa.238410	Cucumis sativus	Cucsa.238410	I	0.000
Cucsa.284240	Cucumis sativus	Cucsa.284240	I	0.000
Eucgr.G01645	Eucalyptus grandis	Eucgr.G01645	N	0.000
Eucgr.I02090	Eucalyptus grandis	Eucgr.I02090	I	0.000
Eucgr.L01789	Eucalyptus grandis	Eucgr.L01789	N	0.000
Thhalv10015835m.g	Eutrema salsugineum	Thhalv10015835m.g	I	0.000
gene04504-v1.0-hybrid	Fragaria vesca	gene04504-v1.0-hybrid	I	0.000
gene21832-v1.0-hybrid	Fragaria vesca	gene21832-v1.0-hybrid	I	0.000
GLYMA01G09510	Glycine max	GLYMA01G09510	I	0.000
GLYMA01G40370	Glycine max	GLYMA01G40370	I	0.000
GLYMA02G13960	Glycine max	GLYMA02G13960	I	0.000
GLYMA04G01210	Glycine max	GLYMA04G01210	I	0.000
GLYMA11G04920	Glycine max	GLYMA11G04920	I	0.000
GLYMA11G12240	Glycine max	GLYMA11G12240	I	0.000
GLYMA12G04440	Glycine max	GLYMA12G04440	I	0.000
GLYMA17G17100	Glycine max	GLYMA17G17100	I	0.000
GLYMA19G05050	Glycine max	GLYMA19G05050	I	0.000
Gorai.001G251000	Gossypium raimondii	Gorai.001G251000	I	0.000
Gorai.003G032100	Gossypium raimondii	Gorai.003G032100	I	0.000
MLOC_62430	Hordeum vulgare	MLOC_62430	I	0.000
Lus10011722.g	Linum usitatissimum	Lus10011722.g	I	0.000
Lus10013059.g	Linum usitatissimum	Lus10013059.g	I	0.000
Lus10029101.g	Linum usitatissimum	Lus10029101.g	I	0.000
Lus10040428.g	Linum usitatissimum	Lus10040428.g	I	0.000
chr2.CM0021.50.nd	Lotus japonicus	chr2.CM0021.50.nd	I	0.000
chr2.CM0124.640.nd	Lotus japonicus	chr2.CM0124.640.nd	I	0.000
MDP0000183562	Malus domestica	MDP0000183562	I	0.000
MDP0000205823	Malus domestica	MDP0000205823	I	0.000
MDP0000239026	Malus domestica	MDP0000239026	I	0.000
MDP0000863909	Malus domestica	MDP0000863909	I	0.000
MDP0000891108	Malus domestica	MDP0000891108	I	0.000
cassava24775.valid.m1	Manihot esculenta	cassava24775.valid.m1	I	0.000
cassava32522.m1	Manihot esculenta	cassava32522.m1	I	0.000
cassava35454.valid.m1	Manihot esculenta	cassava35454.valid.m1	I	0.000
cassava41140.m1	Manihot esculenta	cassava41140.m1	I	0.000
cassava46237.m1	Manihot esculenta	cassava46237.m1	I	0.000
cassava9577.m1	Manihot esculenta	cassava9577.m1	I	0.000
MTR_4g097440	Medicago truncatula	MTR_4g097440	I	0.000
MTR_5g015090	Medicago truncatula	MTR_5g015090	I	0.000
MTR_7g029400	Medicago truncatula	MTR_7g029400	I	0.000
mgf003466m	Mimulus guttatus	mgf003466m	I	0.000
mgf017392m	Mimulus guttatus	mgf017392m	I	0.000
mgf018581m	Mimulus guttatus	mgf018581m	I	0.000
GSMUA_Achr10G12910_001	Musa acuminata	GSMUA_Achr10G12910_001	I	0.000
GSMUA_Achr11G05140_001	Musa acuminata	GSMUA_Achr11G05140_001	I	0.000
GSMUA_Achr1G12710_001	Musa acuminata	GSMUA_Achr1G12710_001	I	0.000
GSMUA_Achr2G06540_001	Musa acuminata	GSMUA_Achr2G06540_001	I	0.000
GSMUA_Achr4G03790_001	Musa acuminata	GSMUA_Achr4G03790_001	I	0.000
GSMUA_Achr9G14690_001	Musa acuminata	GSMUA_Achr9G14690_001	I	0.000
PDK_20s1520551g003	Phoenix dactylifera	PDK_20s1520551g003	I	0.000
POPTR_0004s16560	Populus trichocarpa	POPTR_0004s16560	I	0.000
POPTR_0007s14740	Populus trichocarpa	POPTR_0007s14740	I	0.000
POPTR_0008s11260	Populus trichocarpa	POPTR_0008s11260	I	0.000
POPTR_0009s12250	Populus trichocarpa	POPTR_0009s12250	I	0.000
POPTR_0010s14530	Populus trichocarpa	POPTR_0010s14530	I	0.000
POPTR_0017s14490	Populus trichocarpa	POPTR_0017s14490	I	0.000
Pm002353	Prunus mume	Pm002353	I	0.000
Pm015434	Prunus mume	Pm015434	I	0.000
PRUPE_ppa011366mg	Prunus persica	PRUPE_ppa011366mg	I	0.000
PRUPE_ppa011589mg	Prunus persica	PRUPE_ppa011589mg	I	0.000
PRUPE_ppa011644mg	Prunus persica	PRUPE_ppa011644mg	I	0.000
30131.m007078	Ricinus communis	30131.m007078	I	0.000
30138.m003866	Ricinus communis	30138.m003866	I	0.000
SapurV1A.0060s0610	Salix purpurea	SapurV1A.0060s0610	I	0.000
SapurV1A.0084s0340	Salix purpurea	SapurV1A.0084s0340	I	0.000
SapurV1A.0432s0050	Salix purpurea	SapurV1A.0432s0050	I	0.000
Si019897m.g	Setaria italica	Si019897m.g	I	0.000
Solyc01g109880.2	Solanum lycopersicum	Solyc01g109880.2	I	0.000
Solyc02g084860.1	Solanum lycopersicum	Solyc02g084860.1	I	0.000
Solyc02g092090.1	Solanum lycopersicum	Solyc02g092090.1	I	0.000
Solyc03g046440.1	Solanum lycopersicum	Solyc03g046440.1	I	0.000
Solyc04g005170.1	Solanum lycopersicum	Solyc04g005170.1	I	0.000
PGSC0003DMG400001916	Solanum tuberosum	PGSC0003DMG400001916	I	0.000
PGSC0003DMG400003529	Solanum tuberosum	PGSC0003DMG400003529	I	0.000
PGSC0003DMG400007523	Solanum tuberosum	PGSC0003DMG400007523	I	0.000
PGSC0003DMG400021431	Solanum tuberosum	PGSC0003DMG400021431	I	0.000
PGSC0003DMG400030946	Solanum tuberosum	PGSC0003DMG400030946	I	0.000
TCM_000835	Theobroma cacao	TCM_000835	I	0.000
Traes_6AL_E0ED0DE45	Triticum aestivum	Traes_6AL_E0ED0DE45	I	0.000
Traes_6DL_77ACE1279	Triticum aestivum	Traes_6DL_77ACE1279	I	0.000
VIT_01s0010g00930	Vitis vinifera	VIT_01s0010g00930	I	0.000
VIT_03s0038g04450	Vitis vinifera	VIT_03s0038g04450	I	0.000
VIT_05s0077g01140	Vitis vinifera	VIT_05s0077g01140	I	0.000
GRMZM2G020799	Zea mays	GRMZM2G020799	I	0.000

Alligator_sinensis_CCG005706.1 (Alligator sinensis) Sox

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1933 Related TFs

Alligator_sinensis_CCG005706.1 **(Alligator sinensis)
Sox**