ENSP00000336856-D1 (Bos grunniens)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 ENSP00000336856-D1 T333715_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.563 0.696
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000336856-D1 Sox 103 171

Links

Other Sox family TFs
Other Bos grunniens TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G49560 Brachypodium distachyon BRADI1G49560 I
BRADI1G49570 Brachypodium distachyon BRADI1G49570 I
BRADI4G35570 Brachypodium distachyon BRADI4G35570 N
MLOC_59224 Hordeum vulgare MLOC_59224 I
LPERR06G01360 Leersia perrieri LPERR06G01360 N
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I
ORGLA09G0133000 Oryza glaberrima ORGLA09G0133000 N
DREB1B Oryza indica BGIOSGA029417 N
DREB1C Oryza indica BGIOSGA022219 N
OMERI06G01670 Oryza meridionalis OMERI06G01670 N
ONIVA06G01850 Oryza nivara ONIVA06G01850 N
ONIVA09G17880 Oryza nivara ONIVA09G17880 N
OPUNC06G01430 Oryza punctata OPUNC06G01430 N
ORUFI06G01550 Oryza rufipogon ORUFI06G01550 N
ORUFI09G18190 Oryza rufipogon ORUFI09G18190 N
DREB1C Oryza sativa OS06G0127100 N
Pavir.J35991 Panicum virgatum Pavir.J35991 N
Sb10g001620 Sorghum bicolor Sb10g001620 N
Traes_5BL_B795CE108 Triticum aestivum Traes_5BL_B795CE108 I
Traes_5DL_45B242D3E1 Triticum aestivum Traes_5DL_45B242D3E1 I
GRMZM2G380377 Zea mays GRMZM2G380377 N