orange1.1g043878m.g (Citrus sinensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 orange1.1g043878m.g T334652_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g043878m Sox 34 103

Links

Other Sox family TFs
Other Citrus sinensis TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK10571.1 Cannabis sativa PK10571.1 N 0.666
evm.TU.supercontig_116.14 Carica papaya evm.TU.supercontig_116.14 N 0.638
Ciclev10011294m.g Citrus clementina Ciclev10011294m.g N 0.741
GLYMA10G34561 Glycine max GLYMA10G34561 N 0.550
Gorai.010G218300 Gossypium raimondii Gorai.010G218300 N 0.658
MDP0000237182 Malus domestica MDP0000237182 N 0.606
POPTR_0004s09080 Populus trichocarpa POPTR_0004s09080 N 0.597
Pm014490 Prunus mume Pm014490 N 0.639
PRUPE_ppa003531mg Prunus persica PRUPE_ppa003531mg N 0.639
28748.m000216 Ricinus communis 28748.m000216 N 0.638
SapurV1A.0230s0030 Salix purpurea SapurV1A.0230s0030 N 0.638
SapurV1A.0728s0020 Salix purpurea SapurV1A.0728s0020 N 0.638
Solyc03g043600.1 Solanum lycopersicum Solyc03g043600.1 N 0.629
PGSC0003DMG400016690 Solanum tuberosum PGSC0003DMG400016690 N 0.629
TCM_045462 Theobroma cacao TCM_045462 N 0.668
VIT_14s0006g01840 Vitis vinifera VIT_14s0006g01840 N 0.687