CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK10571.1
(
Cannabis sativa
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
PK10571.1
T334927_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK10571.1
Sox
166
234
TPRPACSWVYFSREFIKEYSASHPESSGLKAATKAASEVWKSMSLEEKAKYTSRAREVWDNYLSAAPTR
Links
Other
Sox
family TFs
Other
Cannabis sativa
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.010G218300
Gossypium raimondii
Gorai.010G218300
N
0.729
TCM_045462
Theobroma cacao
TCM_045462
N
0.711
PRUPE_ppa003531mg
Prunus persica
PRUPE_ppa003531mg
N
0.710
Pm014490
Prunus mume
Pm014490
N
0.710
VIT_14s0006g01840
Vitis vinifera
VIT_14s0006g01840
N
0.691
MDP0000237182
Malus domestica
MDP0000237182
N
0.679
28748.m000216
Ricinus communis
28748.m000216
N
0.676
evm.TU.supercontig_116.14
Carica papaya
evm.TU.supercontig_116.14
N
0.675
orange1.1g043878m.g
Citrus sinensis
orange1.1g043878m.g
N
0.666
Ciclev10011294m.g
Citrus clementina
Ciclev10011294m.g
N
0.666
SapurV1A.0728s0020
Salix purpurea
SapurV1A.0728s0020
N
0.648
SapurV1A.0230s0030
Salix purpurea
SapurV1A.0230s0030
N
0.648
POPTR_0004s09080
Populus trichocarpa
POPTR_0004s09080
N
0.629
Solyc03g043600.1
Solanum lycopersicum
Solyc03g043600.1
N
0.609
PGSC0003DMG400016690
Solanum tuberosum
PGSC0003DMG400016690
N
0.609
GLYMA10G34561
Glycine max
GLYMA10G34561
N
0.571