Pavir.J20558 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.J20558 T334687_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J20558.1.p Sox 557 625
Pavir.J20558.2.p Sox 556 624
Pavir.J20558.3.p Sox 504 572
Pavir.J20558.4.p Sox 504 572

Links

Other Sox family TFs
Other Panicum virgatum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_28104 Aegilops tauschii F775_28104 N 0.587
F775_29723 Aegilops tauschii F775_29723 I 0.654
BRADI2G33580 Brachypodium distachyon BRADI2G33580 N 0.642
MLOC_27773 Hordeum vulgare MLOC_27773 I 0.644
MLOC_6673 Hordeum vulgare MLOC_6673 N 0.568
LPERR01G05200 Leersia perrieri LPERR01G05200 N 0.599
LPERR05G04880 Leersia perrieri LPERR05G04880 N 0.686
mgf024995m Mimulus guttatus mgf024995m I 0.423
OBART05G05520 Oryza barthii OBART05G05520 N 0.686
OBART01G05540 Oryza barthii OBART01G05540 N 0.593
OB01G15440 Oryza brachyantha OB01G15440 N 0.599
OB05G15230 Oryza brachyantha OB05G15230 N 0.686
ORGLA01G0051500 Oryza glaberrima ORGLA01G0051500 N 0.593
ORGLA05G0049600 Oryza glaberrima ORGLA05G0049600 N 0.686
OGLUM01G06010 Oryza glumaepatula OGLUM01G06010 N 0.593
OGLUM05G05400 Oryza glumaepatula OGLUM05G05400 N 0.686
BGIOSGA002908 Oryza indica BGIOSGA002908 N 0.593
BGIOSGA019295 Oryza indica BGIOSGA019295 N 0.686
OLONG_012679 Oryza longistaminata OLONG_012679 N 0.686
OLONG_023518 Oryza longistaminata OLONG_023518 N 0.593
OMERI01G05760 Oryza meridionalis OMERI01G05760 N 0.593
OMERI05G05210 Oryza meridionalis OMERI05G05210 N 0.686
ONIVA01G06280 Oryza nivara ONIVA01G06280 N 0.593
ONIVA05G05990 Oryza nivara ONIVA05G05990 N 0.686
OPUNC02G20230 Oryza punctata OPUNC02G20230 N 0.542
OPUNC01G05380 Oryza punctata OPUNC01G05380 N 0.542
OPUNC05G05150 Oryza punctata OPUNC05G05150 N 0.686
ORUFI01G05970 Oryza rufipogon ORUFI01G05970 N 0.593
ORUFI05G05850 Oryza rufipogon ORUFI05G05850 N 0.686
SSRP1-A Oryza sativa OS01G0184900 N 0.593
SSRP1-B Oryza sativa OS05G0182600 N 0.686
Pavir.J10741 Panicum virgatum Pavir.J10741 N 0.645
Pavir.J08546 Panicum virgatum Pavir.J08546 N 0.604
Pavir.Ea00282 Panicum virgatum Pavir.Ea00282 N 0.604
Pavir.Ca01033 Panicum virgatum Pavir.Ca01033 N 0.741
Si024096m.g Setaria italica Si024096m.g N 0.643
Si021575m.g Setaria italica Si021575m.g N 0.735
Si000646m.g Setaria italica Si000646m.g N 0.604
Sb09g005650 Sorghum bicolor Sb09g005650 N 0.735
Sb03g003450 Sorghum bicolor Sb03g003450 N 0.604
Traes_1AS_3FCB35E65 Triticum aestivum Traes_1AS_3FCB35E65 I 0.654
Traes_1BS_15F9D276D Triticum aestivum Traes_1BS_15F9D276D I 0.654
Traes_1DS_C7F1E9F38 Triticum aestivum Traes_1DS_C7F1E9F38 I 0.654
Traes_3AS_AAAAD30B5 Triticum aestivum Traes_3AS_AAAAD30B5 N 0.587
TRAES3BF096800150CFD_g Triticum aestivum TRAES3BF096800150CFD_g N 0.587
TRIUR3_14091 Triticum urartu TRIUR3_14091 N 0.587
GRMZM2G032252 Zea mays GRMZM2G032252 N 0.604
GRMZM5G842484 Zea mays GRMZM5G842484 N 0.735