TBR1 (Canis familiaris)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSCAFG00000009984 T339667_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbr1
M01028_2.00 		Mus musculus
DTVRCAMNYH
DRNKTGYBAH		 PBM
SebePedros et al.(2013)
pTH2659 		0.920 1.000
TBR1
M03560_2.00 		Homo sapiens
AGGTGTGAAN
NTTCACACCT		 SELEX
Jolma et al.(2013)
TBR1_1 		0.920 1.000
TBR1
M03561_2.00 		Homo sapiens
RAGGTGTGAAH
DTTCACACCTY		 SELEX
Jolma et al.(2013)
TBR1_2 		0.920 1.000
Eomes
M00215_2.00 		Mus musculus
RDGTGYBANN
NNTVRCACHY		 PBM
Badis et al.(2009)
Eomes_0921 		0.865 0.874
EOMES
M03563_2.00 		Homo sapiens
DAGGTGTGAWNNN
NNNWTCACACCTH		 SELEX
Jolma et al.(2013)
EOMES_1 		0.865 0.869
EOMES
M03564_2.00 		Homo sapiens
TVACACNTNNNDRNGTGTGA
TCACACNYHNNNANGTGTBA		 SELEX
Jolma et al.(2013)
EOMES_2 		0.865 0.869
EOMES
M02752_2.00 		Homo sapiens
AGGTGTGAW
WTCACACCT		 SELEX
Jolma et al.(2010)
EOMES_monomer 		0.865 0.869
EOMES
M05807_2.00 		Homo sapiens
DAGGTGTGAN
NTCACACCTH		 SELEX
Yin et al.(2017)
EOMES_eDBD_HT-SELEX 		0.865 0.869
EOMES
M09647_2.00 		Homo sapiens
ARGTGWKAAN
NTTMWCACYT		 Misc
Heinz et al.(2010)
H9-Eomes_GSE26097 		0.865 0.869
EOMES
M05808_2.00 		Homo sapiens
NABGTGYKAH
DTMRCACVTN		 SELEX
Yin et al.(2017)
EOMES_eDBD_Methyl-HT-SELEX 		0.865 0.869
A0A075Q982_PATMI
M00734_2.00 		Patiria miniata
NAGGTGTBAN
NTVACACCTN		 PBM
Cheatle-Jarvela et al.(2014)
PmTbr 		0.789 0.645
TBX21
M03546_2.00 		Homo sapiens
GGTGTGAHDTMACACY
RGTGTKAHDTCACACC		 SELEX
Jolma et al.(2013)
TBX21_1 		0.766 0.732
TBX21
M03547_2.00 		Homo sapiens
DAGGTGTGAW
WTCACACCTH		 SELEX
Jolma et al.(2013)
TBX21_2 		0.766 0.732
TBX21
M03548_2.00 		Homo sapiens
TMACACYTNNDAGGTGTGA
TCACACCTHNNARGTGTKA		 SELEX
Jolma et al.(2013)
TBX21_3 		0.766 0.732
TBX21
M03549_2.00 		Homo sapiens
GGTGTGAWATCACACC
GGTGTGATWTCACACC		 SELEX
Jolma et al.(2013)
TBX21_4 		0.766 0.732
TBX21
M03550_2.00 		Homo sapiens
DAGGTGTGAW
WTCACACCTH		 SELEX
Jolma et al.(2013)
TBX21_5 		0.766 0.732
TBX21
M03551_2.00 		Homo sapiens
TSACACCWNMRAGGTGTGA
TCACACCTYKNWGGTGTSA		 SELEX
Jolma et al.(2013)
TBX21_6 		0.766 0.732
TBX21
M05793_2.00 		Homo sapiens
DAGGTGTKAN
NTMACACCTH		 SELEX
Yin et al.(2017)
TBX21_eDBD_HT-SELEX 		0.766 0.732
TBX21
M09425_2.00 		Homo sapiens
NDSDRGSTGWBRN
NYVWCASCYHSHN		 Misc
Kulakovskiy et al.(2013)
TBX21_HUMAN.H11MO.0.A 		0.766 0.732
Tbx21
M09428_2.00 		Mus musculus
DNDDSTGWSDND
HNHSWCASHHNH		 Misc
Kulakovskiy et al.(2013)
TBX21_MOUSE.H11MO.0.A 		0.766 0.732
Tbx21
M09648_2.00 		Mus musculus
ADGTGWSAHN
NDTSWCACHT		 Misc
Heinz et al.(2010)
CD8-Tbet_GSE33802 		0.766 0.732
TBX21
M05794_2.00 		Homo sapiens
DASGTGTKAW
WTMACACSTH		 SELEX
Yin et al.(2017)
TBX21_eDBD_Methyl-HT-SELEX 		0.766 0.732
SPU_025584
M00733_2.00 		Strongylocentrotus purpuratus
RGGTGTGANN
NNTCACACCY		 PBM
Cheatle-Jarvela et al.(2014)
SpTbr 		0.762 0.617
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000014694 T-box 206 393

Links

Other T-box family TFs
Other Canis familiaris TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_009_00676 Aquilegia coerulea Aquca_009_00676 N
NF-YA10 Arabidopsis lyrata scaffold_600636.1 N
NFYA5 Arabidopsis lyrata Al_scaffold_0001_4860 N
UNE8 Arabidopsis lyrata fgenesh2_kg.3__563__AT3G05690.1 N
HAP2C Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001597 N
NFYA5 Arabidopsis thaliana AT1G54160 N
NFYA10 Arabidopsis thaliana AT5G06510 N
HAP2C Arabidopsis thaliana AT1G72830 N
UNE8 Arabidopsis thaliana AT3G05690 N
Bostr.7128s0065 Boechera stricta Bostr.7128s0065 N
Bostr.13129s0320 Boechera stricta Bostr.13129s0320 N
Bo5g145140 Brassica oleracea Bo5g145140 N
Bo9g176100 Brassica oleracea Bo9g176100 N
Bo1g150420 Brassica oleracea Bo1g150420 N
Bo3g060160 Brassica oleracea Bo3g060160 N
Bra001164 Brassica rapa Bra001164 N
Bra009200 Brassica rapa Bra009200 N
Bra040529 Brassica rapa Bra040529 N
PK20005.1 Cannabis sativa PK20005.1 N
PK26326.1 Cannabis sativa PK26326.1 N
Cagra.2117s0012 Capsella grandiflora Cagra.2117s0012 N
Cagra.2108s0005 Capsella grandiflora Cagra.2108s0005 N
Cagra.20869s0002 Capsella grandiflora Cagra.20869s0002 N
Carubv10001713m.g Capsella rubella Carubv10001713m.g N
Carubv10009883m.g Capsella rubella Carubv10009883m.g N
Carubv10014086m.g Capsella rubella Carubv10014086m.g N
evm.TU.supercontig_104.9 Carica papaya evm.TU.supercontig_104.9 N
evm.TU.supercontig_25.96 Carica papaya evm.TU.supercontig_25.96 N
Ca_14455 Cicer arietinum Ca_14455 N
Ca_11593 Cicer arietinum Ca_11593 N
Ca_10039 Cicer arietinum Ca_10039 N
Ca_00866 Cicer arietinum Ca_00866 N
Cla017115 Citrullus lanatus Cla017115 N
Cla017884 Citrullus lanatus Cla017884 N
Ciclev10012232m.g Citrus clementina Ciclev10012232m.g N
orange1.1g021081m.g Citrus sinensis orange1.1g021081m.g N
Cucsa.241980 Cucumis sativus Cucsa.241980 N
Eucgr.C00842 Eucalyptus grandis Eucgr.C00842 N
Eucgr.A02570 Eucalyptus grandis Eucgr.A02570 N
Thhalv10021244m.g Eutrema salsugineum Thhalv10021244m.g N
Thhalv10014346m.g Eutrema salsugineum Thhalv10014346m.g N
gene12709-v1.0-hybrid Fragaria vesca gene12709-v1.0-hybrid N
gene18295-v1.0-hybrid Fragaria vesca gene18295-v1.0-hybrid N
GLYMA17G05920 Glycine max GLYMA17G05920 I
GLYMA09G07960 Glycine max GLYMA09G07960 I
GLYMA07G04050 Glycine max GLYMA07G04050 I
GLYMA19G38800 Glycine max GLYMA19G38800 N
GLYMA03G36140 Glycine max GLYMA03G36140 N
GLYMA02G35190 Glycine max GLYMA02G35190 N
GLYMA16G00711 Glycine max GLYMA16G00711 I
GLYMA15G18970 Glycine max GLYMA15G18970 I
GLYMA13G16770 Glycine max GLYMA13G16770 N
GLYMA10G10240 Glycine max GLYMA10G10240 N
Gorai.002G234400 Gossypium raimondii Gorai.002G234400 N
Gorai.007G363800 Gossypium raimondii Gorai.007G363800 N
Gorai.009G143800 Gossypium raimondii Gorai.009G143800 N
Gorai.012G010900 Gossypium raimondii Gorai.012G010900 N
Lus10013592.g Linum usitatissimum Lus10013592.g N
Lus10021259.g Linum usitatissimum Lus10021259.g N
LjT30L14.130.nd Lotus japonicus LjT30L14.130.nd N
chr1.CM0361.430.nc Lotus japonicus chr1.CM0361.430.nc N
chr3.CM0724.30.nd Lotus japonicus chr3.CM0724.30.nd I
chr5.CM0571.20.nd Lotus japonicus chr5.CM0571.20.nd N
LjSGA_058509.1 Lotus japonicus LjSGA_058509.1 N
MDP0000948645 Malus domestica MDP0000948645 N
MDP0000827821 Malus domestica MDP0000827821 N
MDP0000785523 Malus domestica MDP0000785523 N
MDP0000588222 Malus domestica MDP0000588222 N
MDP0000375005 Malus domestica MDP0000375005 N
MDP0000279028 Malus domestica MDP0000279028 N
MDP0000183865 Malus domestica MDP0000183865 I
MDP0000129029 Malus domestica MDP0000129029 N
MTR_1g056530 Medicago truncatula MTR_1g056530 N
MTR_2g041090 Medicago truncatula MTR_2g041090 N
MTR_7g106450 Medicago truncatula MTR_7g106450 N
MTR_8g019540 Medicago truncatula MTR_8g019540 I
GSMUA_Achr7G07860_001 Musa acuminata GSMUA_Achr7G07860_001 N
POPTR_0006s14740 Populus trichocarpa POPTR_0006s14740 N
POPTR_0018s07220 Populus trichocarpa POPTR_0018s07220 N
POPTR_0016s06860 Populus trichocarpa POPTR_0016s06860 N
POPTR_0006s21640 Populus trichocarpa POPTR_0006s21640 N
Pm027028 Prunus mume Pm027028 N
Pm026038 Prunus mume Pm026038 N
PRUPE_ppa017366mg Prunus persica PRUPE_ppa017366mg N
PRUPE_ppa016008mg Prunus persica PRUPE_ppa016008mg N
29333.m001059 Ricinus communis 29333.m001059 N
29912.m005288 Ricinus communis 29912.m005288 N
SapurV1A.0258s0010 Salix purpurea SapurV1A.0258s0010 N
SapurV1A.0980s0030 Salix purpurea SapurV1A.0980s0030 N
SapurV1A.1209s0040 Salix purpurea SapurV1A.1209s0040 N
Si019645m.g Setaria italica Si019645m.g N
Solyc12g009050.1 Solanum lycopersicum Solyc12g009050.1 N
PGSC0003DMG400000272 Solanum tuberosum PGSC0003DMG400000272 N
TCM_037576 Theobroma cacao TCM_037576 N
TCM_022984 Theobroma cacao TCM_022984 N
VIT_11s0016g01480 Vitis vinifera VIT_11s0016g01480 N
VIT_08s0032g01190 Vitis vinifera VIT_08s0032g01190 N
GRMZM5G857944 Zea mays GRMZM5G857944 N