Pavir.J35609 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.J35609 T345024_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.948 0.619
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.943 0.588
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.941 0.588
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.912 0.495
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.894 0.567
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.894 0.567
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.893 0.515
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.893 0.515
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.885 0.526
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.885 0.526
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.885 0.526
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.884 0.495
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.884 0.485
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.876 0.485
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.872 0.485
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.859 0.464
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J35609.1.p TCP 56 174

Links

Other TCP family TFs
Other Panicum virgatum TFs

428 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_07647 Aegilops tauschii F775_07647 N
F775_09086 Aegilops tauschii F775_09086 N
AB03151.1 Alternaria brassicicola AB03151.1 I
AMTR_s00004p00174960 Amborella trichopoda AMTR_s00004p00174960 N
AMTR_s00103p00144230 Amborella trichopoda AMTR_s00103p00144230 I
Aquca_009_00676 Aquilegia coerulea Aquca_009_00676 N
HAP2A Arabidopsis lyrata Al_scaffold_0006_1178 N
NF-YA10 Arabidopsis lyrata scaffold_600636.1 N
NFYA10 Arabidopsis thaliana AT5G06510 N
NFYA1 Arabidopsis thaliana AT5G12840 N
M437DRAFT_74372 Aureobasidium melanogenum M437DRAFT_74372 I
M438DRAFT_358724 Aureobasidium pullulans M438DRAFT_358724 I
COCC4DRAFT_21556 Bipolaris maydis COCC4DRAFT_21556 I
COCMIDRAFT_31784 Bipolaris oryzae COCMIDRAFT_31784 I
COCSADRAFT_336507 Bipolaris sorokiniana COCSADRAFT_336507 I
COCVIDRAFT_13139 Bipolaris victoriae COCVIDRAFT_13139 I
COCCADRAFT_25556 Bipolaris zeicola COCCADRAFT_25556 I
Bostr.13129s0320 Boechera stricta Bostr.13129s0320 N
Bostr.2902s0020 Boechera stricta Bostr.2902s0020 N
BRADI1G11800 Brachypodium distachyon BRADI1G11800 I
BRADI1G13680 Brachypodium distachyon BRADI1G13680 N
BRADI4G01380 Brachypodium distachyon BRADI4G01380 N
Bo2g010950 Brassica oleracea Bo2g010950 N
Bo3g008860 Brassica oleracea Bo3g008860 N
Bo9g169310 Brassica oleracea Bo9g169310 N
Bra006165 Brassica rapa Bra006165 N
Bra008878 Brassica rapa Bra008878 I
Bra023378 Brassica rapa Bra023378 N
PK11147.1 Cannabis sativa PK11147.1 I
PK21261.1 Cannabis sativa PK21261.1 I
Cagra.1535s0021 Capsella grandiflora Cagra.1535s0021 N
Cagra.2117s0012 Capsella grandiflora Cagra.2117s0012 N
Carubv10001701m.g Capsella rubella Carubv10001701m.g N
Carubv10001713m.g Capsella rubella Carubv10001713m.g N
evm.TU.supercontig_104.9 Carica papaya evm.TU.supercontig_104.9 N
evm.TU.supercontig_125.6 Carica papaya evm.TU.supercontig_125.6 I
evm.TU.supercontig_84.49 Carica papaya evm.TU.supercontig_84.49 I
Ca_00866 Cicer arietinum Ca_00866 N
Ca_15574 Cicer arietinum Ca_15574 I
Cla000845 Citrullus lanatus Cla000845 N
Cla008690 Citrullus lanatus Cla008690 N
Cla015490 Citrullus lanatus Cla015490 I
Cla017115 Citrullus lanatus Cla017115 N
Cla017884 Citrullus lanatus Cla017884 N
Ciclev10005144m.g Citrus clementina Ciclev10005144m.g I
Ciclev10012232m.g Citrus clementina Ciclev10012232m.g N
Ciclev10015808m.g Citrus clementina Ciclev10015808m.g I
Ciclev10032207m.g Citrus clementina Ciclev10032207m.g N
orange1.1g017825m.g Citrus sinensis orange1.1g017825m.g I
orange1.1g019036m.g Citrus sinensis orange1.1g019036m.g I
orange1.1g019764m.g Citrus sinensis orange1.1g019764m.g N
orange1.1g021081m.g Citrus sinensis orange1.1g021081m.g N
estExt_fgenesh1_pm.C_30047 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_30047 I
Cucsa.124180 Cucumis sativus Cucsa.124180 N
Cucsa.127910 Cucumis sativus Cucsa.127910 I
Cucsa.241980 Cucumis sativus Cucsa.241980 N
Eucgr.A02381 Eucalyptus grandis Eucgr.A02381 N
Eucgr.G03377 Eucalyptus grandis Eucgr.G03377 N
Eucgr.J00764 Eucalyptus grandis Eucgr.J00764 N
Thhalv10014364m.g Eutrema salsugineum Thhalv10014364m.g N
gene14681-v1.0-hybrid Fragaria vesca gene14681-v1.0-hybrid I
gene18295-v1.0-hybrid Fragaria vesca gene18295-v1.0-hybrid N
GLYMA02G47380 Glycine max GLYMA02G47380 N
GLYMA08G45030 Glycine max GLYMA08G45030 I
GLYMA12G36540 Glycine max GLYMA12G36540 I
GLYMA13G27230 Glycine max GLYMA13G27230 I
GLYMA14G01360 Glycine max GLYMA14G01360 N
GLYMA18G07890 Glycine max GLYMA18G07890 I
GLYMA19G38800 Glycine max GLYMA19G38800 N
Gorai.002G151800 Gossypium raimondii Gorai.002G151800 I
Gorai.003G093300 Gossypium raimondii Gorai.003G093300 I
Gorai.004G066000 Gossypium raimondii Gorai.004G066000 I
Gorai.004G172100 Gossypium raimondii Gorai.004G172100 I
Gorai.013G251200 Gossypium raimondii Gorai.013G251200 N
MLOC_76757 Hordeum vulgare MLOC_76757 N
LPERR03G22840 Leersia perrieri LPERR03G22840 N
LPERR03G25340 Leersia perrieri LPERR03G25340 I
LPERR07G03140 Leersia perrieri LPERR07G03140 N
LPERR12G16030 Leersia perrieri LPERR12G16030 N
LEMA_P028420.1 Leptosphaeria maculans LEMA_P028420.1 I
Lus10009944.g Linum usitatissimum Lus10009944.g I
Lus10011326.g Linum usitatissimum Lus10011326.g I
Lus10012202.g Linum usitatissimum Lus10012202.g I
Lus10013592.g Linum usitatissimum Lus10013592.g N
Lus10016411.g Linum usitatissimum Lus10016411.g I
Lus10019708.g Linum usitatissimum Lus10019708.g I
Lus10021259.g Linum usitatissimum Lus10021259.g N
Lus10030137.g Linum usitatissimum Lus10030137.g I
LjSGA_007063.1 Lotus japonicus LjSGA_007063.1 N
MDP0000129029 Malus domestica MDP0000129029 N
MDP0000183865 Malus domestica MDP0000183865 I
MDP0000375005 Malus domestica MDP0000375005 N
MDP0000588222 Malus domestica MDP0000588222 N
MDP0000785523 Malus domestica MDP0000785523 N
MDP0000948645 Malus domestica MDP0000948645 N
cassava2144.valid.m1 Manihot esculenta cassava2144.valid.m1 I
cassava29667.valid.m1 Manihot esculenta cassava29667.valid.m1 I
cassava30668.valid.m1 Manihot esculenta cassava30668.valid.m1 I
cassava36568.valid.m1 Manihot esculenta cassava36568.valid.m1 I
cassava38260.valid.m1 Manihot esculenta cassava38260.valid.m1 I
MTR_3g061510 Medicago truncatula MTR_3g061510 N
MTR_7g106450 Medicago truncatula MTR_7g106450 N
MTR_8g037270 Medicago truncatula MTR_8g037270 N
EuGene.0000150165 Micromonas pusilla EuGene.0000150165 N
estExt_fgenesh2_pg.C_Chr_130205 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_130205 N
GSMUA_Achr2G12930_001 Musa acuminata GSMUA_Achr2G12930_001 N
GSMUA_Achr3G29730_001 Musa acuminata GSMUA_Achr3G29730_001 N
GSMUA_Achr4G03600_001 Musa acuminata GSMUA_Achr4G03600_001 N
GSMUA_Achr4G11090_001 Musa acuminata GSMUA_Achr4G11090_001 I
GSMUA_Achr4G28390_001 Musa acuminata GSMUA_Achr4G28390_001 N
GSMUA_Achr4G31420_001 Musa acuminata GSMUA_Achr4G31420_001 N
GSMUA_Achr5G02590_001 Musa acuminata GSMUA_Achr5G02590_001 N
GSMUA_Achr7G07860_001 Musa acuminata GSMUA_Achr7G07860_001 N
OBART03G21180 Oryza barthii OBART03G21180 I
OBART03G30600 Oryza barthii OBART03G30600 I
OBART07G03630 Oryza barthii OBART07G03630 N
OBART12G19060 Oryza barthii OBART12G19060 N
OB03G35340 Oryza brachyantha OB03G35340 N
OB03G37700 Oryza brachyantha OB03G37700 I
OB12G25960 Oryza brachyantha OB12G25960 N
ORGLA03G0197400 Oryza glaberrima ORGLA03G0197400 I
ORGLA03G0280400 Oryza glaberrima ORGLA03G0280400 I
ORGLA07G0030900 Oryza glaberrima ORGLA07G0030900 N
ORGLA12G0163500 Oryza glaberrima ORGLA12G0163500 N
OGLUM02G35650 Oryza glumaepatula OGLUM02G35650 N
OGLUM03G21930 Oryza glumaepatula OGLUM03G21930 I
OGLUM03G28230 Oryza glumaepatula OGLUM03G28230 N
OGLUM03G30810 Oryza glumaepatula OGLUM03G30810 I
OGLUM07G02990 Oryza glumaepatula OGLUM07G02990 N
OGLUM12G20730 Oryza glumaepatula OGLUM12G20730 N
BGIOSGA010142 Oryza indica BGIOSGA010142 N
BGIOSGA013378 Oryza indica BGIOSGA013378 I
BGIOSGA024793 Oryza indica BGIOSGA024793 N
BGIOSGA035818 Oryza indica BGIOSGA035818 N
OLONG_002491 Oryza longistaminata OLONG_002491 N
OLONG_006679 Oryza longistaminata OLONG_006679 I
OMERI03G24480 Oryza meridionalis OMERI03G24480 N
OMERI03G26770 Oryza meridionalis OMERI03G26770 I
OMERI07G18960 Oryza meridionalis OMERI07G18960 N
OMERI12G13600 Oryza meridionalis OMERI12G13600 N
ONIVA03G10270 Oryza nivara ONIVA03G10270 I
ONIVA03G28530 Oryza nivara ONIVA03G28530 N
ONIVA03G31950 Oryza nivara ONIVA03G31950 I
ONIVA07G02150 Oryza nivara ONIVA07G02150 N
ONIVA12G18060 Oryza nivara ONIVA12G18060 N
OPUNC03G25190 Oryza punctata OPUNC03G25190 N
OPUNC03G27900 Oryza punctata OPUNC03G27900 I
OPUNC07G03530 Oryza punctata OPUNC07G03530 N
OPUNC12G17240 Oryza punctata OPUNC12G17240 N
ORUFI03G21850 Oryza rufipogon ORUFI03G21850 I
ORUFI03G28690 Oryza rufipogon ORUFI03G28690 N
ORUFI03G31840 Oryza rufipogon ORUFI03G31840 I
ORUFI07G03340 Oryza rufipogon ORUFI07G03340 N
ORUFI12G21270 Oryza rufipogon ORUFI12G21270 N
OS03G0647600 Oryza sativa OS03G0647600 N
OS03G0696300 Oryza sativa OS03G0696300 I
OS07G0158500 Oryza sativa OS07G0158500 N
OS12G0618600 Oryza sativa OS12G0618600 N
Pavir.Ba00442 Panicum virgatum Pavir.Ba00442 I
Pavir.Ba03783 Panicum virgatum Pavir.Ba03783 N
Pavir.Bb00319 Panicum virgatum Pavir.Bb00319 N
Pavir.Cb00052 Panicum virgatum Pavir.Cb00052 N
Pavir.Ia00780 Panicum virgatum Pavir.Ia00780 I
Pavir.Ia01146 Panicum virgatum Pavir.Ia01146 N
Pavir.Ib04124 Panicum virgatum Pavir.Ib04124 N
Pavir.J05826 Panicum virgatum Pavir.J05826 I
Pavir.J08102 Panicum virgatum Pavir.J08102 I
Pavir.J24924 Panicum virgatum Pavir.J24924 N
SNOG_15220 Phaeosphaeria nodorum SNOG_15220 I
POPTR_0001s27300 Populus trichocarpa POPTR_0001s27300 N
POPTR_0006s05210 Populus trichocarpa POPTR_0006s05210 I
POPTR_0009s06540 Populus trichocarpa POPTR_0009s06540 N
POPTR_0016s05440 Populus trichocarpa POPTR_0016s05440 I
Pm012301 Prunus mume Pm012301 I
Pm026038 Prunus mume Pm026038 N
PRUPE_ppa006634mg Prunus persica PRUPE_ppa006634mg I
PRUPE_ppa017366mg Prunus persica PRUPE_ppa017366mg N
MYCFIDRAFT_209677 Pseudocercospora fijiensis MYCFIDRAFT_209677 I
PTT_11232 Pyrenophora teres PTT_11232 I
PTRG_08051 Pyrenophora triticirepentis PTRG_08051 I
29333.m001059 Ricinus communis 29333.m001059 N
29864.m001503 Ricinus communis 29864.m001503 N
30169.m006445 Ricinus communis 30169.m006445 I
SapurV1A.0027s0420 Salix purpurea SapurV1A.0027s0420 N
SapurV1A.0111s0280 Salix purpurea SapurV1A.0111s0280 N
SapurV1A.0133s0410 Salix purpurea SapurV1A.0133s0410 I
SapurV1A.2739s0010 Salix purpurea SapurV1A.2739s0010 N
SELMODRAFT_38090 Selaginella moellendorffii SELMODRAFT_38090 N
SELMODRAFT_438143 Selaginella moellendorffii SELMODRAFT_438143 N
Si022607m.g Setaria italica Si022607m.g N
Si030663m.g Setaria italica Si030663m.g I
Si032469m.g Setaria italica Si032469m.g N
Si036465m.g Setaria italica Si036465m.g N
Si037045m.g Setaria italica Si037045m.g I
SETTUDRAFT_148331 Setosphaeria turcica SETTUDRAFT_148331 I
Solyc01g087240.2 Solanum lycopersicum Solyc01g087240.2 I
PGSC0003DMG400006863 Solanum tuberosum PGSC0003DMG400006863 I
Sb01g011220 Sorghum bicolor Sb01g011220 I
Sb01g013430 Sorghum bicolor Sb01g013430 N
Sb02g003320 Sorghum bicolor Sb02g003320 N
Sb02g038960 Sorghum bicolor Sb02g038960 I
Sb08g021910 Sorghum bicolor Sb08g021910 N
SNOG_15220 Stagonospora nodorum SNOG_15220 I
TCM_005875 Theobroma cacao TCM_005875 I
TCM_022984 Theobroma cacao TCM_022984 N
TCM_024732 Theobroma cacao TCM_024732 I
TCM_026909 Theobroma cacao TCM_026909 N
TCM_040712 Theobroma cacao TCM_040712 I
Traes_4AL_7C4C68FD0 Triticum aestivum Traes_4AL_7C4C68FD0 I
Traes_4BS_B7B7EFF37 Triticum aestivum Traes_4BS_B7B7EFF37 I
Traes_4DS_AFBE29C20 Triticum aestivum Traes_4DS_AFBE29C20 I
Traes_5AL_047ABC9FC Triticum aestivum Traes_5AL_047ABC9FC N
Traes_5AS_378F353CF Triticum aestivum Traes_5AS_378F353CF N
Traes_5BL_B5F4BA2FD Triticum aestivum Traes_5BL_B5F4BA2FD N
Traes_5BS_F1DE20B4B Triticum aestivum Traes_5BS_F1DE20B4B N
Traes_5DL_7F3ABFDD6 Triticum aestivum Traes_5DL_7F3ABFDD6 N
Traes_5DS_443F1993A Triticum aestivum Traes_5DS_443F1993A N
TRIUR3_09920 Triticum urartu TRIUR3_09920 I
TRIUR3_27732 Triticum urartu TRIUR3_27732 N
TRIUR3_28596 Triticum urartu TRIUR3_28596 N
VIT_08s0007g08250 Vitis vinifera VIT_08s0007g08250 I
VIT_08s0032g01190 Vitis vinifera VIT_08s0032g01190 N
VIT_13s0064g00860 Vitis vinifera VIT_13s0064g00860 I
GRMZM2G038303 Zea mays GRMZM2G038303 I
GRMZM2G091964 Zea mays GRMZM2G091964 I
GRMZM2G096016 Zea mays GRMZM2G096016 N
GRMZM2G165488 Zea mays GRMZM2G165488 N
GRMZM5G829103 Zea mays GRMZM5G829103 N